Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9055)
Replies Last Post Views
Remove entry from Tool Data Table using via Data Manager by dfornika
3
by dfornika
FTP service for galaxy with external authentication via SAML using shibboleth by Martin Demko
3
by Martin Čech
planemo/toolshed error, assistance request by Dennis, H. E. Cicada...
1
by Dave Bouvier
Doubts about FTP upload. by Álvaro Rios
1
by Jennifer Hillman-Jac...
fonts on headless compute nodes by Matthias Bernt
1
by Björn Grüning-3
question regarding GALXY software by דויד קורנספן [David...
1
by Martin Čech
Ballgown does not work by Jochen
6
by Nicola Soranzo-2
Problems running reporting app with reports.yml using --daemon by Peter Briggs
0
by Peter Briggs
Best practices for utilising Unique Molecular Indexing (UMI's) by BigTA78
5
by Charles Girardot
Tool to download galaxy datasets locally by evan clark
1
by Nicola Soranzo-2
Shiny in Galaxy by Mohamed Kassam
9
by Romain Dallet
GVL/Galaxy ver 18.01 instance error: R_COMM channel basic get exception: [Errno 32] Broken pipe by Leon Parker
1
by Martin Čech-2
Re: firezilla not working by Atanu Pan
3
by Atanu Pan
How to enable charts visualization for fasta files ? by SAPET, Frederic
0
by SAPET, Frederic
Problems installing Galaxy 18.01 by Peter van Heusden
3
by Peter van Heusden
FileZilla not working by Antara Biswas
0
by Antara Biswas
tool dependencies by Matthias Bernt
1
by John Chilton-4
Re: March Galaxy News: GCCBOSC oral presentations due in 2 weeks, plus lots more by Dave Clements-2
1
by Dave Clements-2
Error during FASTQ preview by Previti
1
by Peter Cock
API Access and User Impersonation by jletaw667
0
by jletaw667
Gateways 2018 Call for Participation (1st deadline: May 7) by Katherine Lawrence
0
by Katherine Lawrence
Ensuring Python 2.7 when resolving conda dependencies for tool by Peter Briggs
6
by Peter Briggs
Disabling downloading datasets from the UI! by Hakeem Almabrazi-2
0
by Hakeem Almabrazi-2
bigwig problem by Jochen
7
by Jochen
tool output pattern syntax by Jochen
0
by Jochen
Problem Loading Conda tool dependencies by Hendriks, Marian
0
by Hendriks, Marian
Updating Bioblend on existing Galaxy installation by Lachlan Musicman
2
by Martin Čech
environment for jobs by Matthias Bernt
0
by Matthias Bernt
Help with from_dataset param in Galaxy XML by SAPET, Frederic
0
by SAPET, Frederic
Looking for a running example of planemo test with options from_data_table by Laure QUINTRIC
1
by Nicola Soranzo-2
Running toolshed on localhost is broken in release_17.09? by Peter Briggs
2
by Peter Briggs
Planemo unable to create a shed by Begusch Florian
0
by Begusch Florian
Re: Predict similar tools for Galaxy tools using text mining and machine learning by Yvan Le Bras-2
1
by anup_kumar
use or convert tool.xml file for database webpage by Jochen
3
by Gildas Le Corguillé
Predict similar tools for Galaxy tools using text mining and machine learning by anup_kumar
0
by anup_kumar
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