Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9139)
Replies Last Post Views
Conda issue on a server using a sshfs mounting point by Estelle Ancelet
2
by Estelle Ancelet
GalaxyAdmins is returning to a device near you in February 2019, and we need your help by Dave Clements-2
0
by Dave Clements-2
_remove_dead_weakref error even after deleting .venv (Galaxy 18.09) by Peter van Heusden
1
by Peter van Heusden
how to configure sub-uri in galaxy.yml by Ping
1
by Peter Briggs
Please nominate training topics for GCC2019 by Dec 31 by Dave Clements-2
0
by Dave Clements-2
XMLs not reloading in all processes (UWSGI)? by D K
2
by D K
Fastq.gz datatype not recognized on import to data library by Previti
3
by Peter Cock
installation is not finishing by Jochen
7
by Previti
number of elements in collections and multiple-true-params by Matthias Bernt
2
by Matthias Bernt
Galaxy Administrator Training, Jan 28 - Feb 1, Penn State University by Dave Clements-2
1
by Dave Clements-2
Multifactor RNA-Seq Analysis and interaction terms by Lance Parsons
0
by Lance Parsons
Adding the Ilifu cloud to launch.usegalaxy.org by Peter van Heusden
0
by Peter van Heusden
Running Cloudlaunch against a new OpenStack cloud by Peter van Heusden
1
by Peter van Heusden
Search box in tools menu / uncomplete wrappers list by Sarah Maman-3
4
by E. Rasche
Bug in data manager for the STAR aligner indices by Previti
0
by Previti
Nginx+Shibboleth+UCSC by Martin Demko
0
by Martin Demko
galaxy kickstart failed to install tools by Rui Wang
0
by Rui Wang
Galaxy Administrator Training, Jan 28 - Feb 1, Penn State University by Mo Heydarian
0
by Mo Heydarian
Problem with cleanup.py by georgeweingart
1
by Jelle Scholtalbers
Reinstall Galaxy by keeping database, database files and tools by Jochen
1
by Nate Coraor (nate@bx...
Galaxy 18.09 Release by Dannon Baker-2
0
by Dannon Baker-2
regarding galaxy kickstart by Rui Wang
5
by Previti
Get Data and 'xlsx' by D K
4
by Peter Cock
error and question from using galaxy kickstart by Rui Wang
1
by Rui Wang
can't create user on a new instance by Rui Wang
7
by Rui Wang
Error when trying to update tool vcf_to_alignment in testtoolshed by Peter van Heusden
0
by Peter van Heusden
tool data confusion by Matthias Bernt
4
by Jelle Scholtalbers
[CLI] Job sent to cluster never gets back by Estelle Ancelet
0
by Estelle Ancelet
learning pulsar for galaxy by Wong, Kai Leung
2
by dfornika
Using Singularity images to resolve dependences in Galaxy 18.05 by Peter van Heusden
2
by Peter van Heusden
Issue with deseq2 by Previti
3
by Previti
"Merging tabular data tables with non-matching columns is not allowed" by Peter van Heusden
6
by Peter van Heusden
Update from 17.10 to 18.05 by Jochen
1
by Dannon Baker-2
good practice for Galaxy admin and updates ? by juliech
3
by Keith Suderman
Salmon references and data manager by Previti
3
by Previti
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