Galaxy Development List Archive

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Galaxy

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs. You can also search the archives of the Galaxy-User mailing list. Galaxy is a part of the Generic Model Organism Database (GMOD) project.


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Re: ? IOError: [Errno 13] Permission denied: u'/home/koala2/galaxy-central/database/compiled_templates/base_panels.mako.py' by Josh Nielsen
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by Josh Nielsen
user data upload directory structure by Jean-Christophe Duco...
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by Josh Nielsen
Compressed data files in Galaxy? (e.g. GZIP or BGZF) by Peter Cock
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by Peter Cock
Value error when running run.sh by julie dubois
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by Nate Coraor (nate@bx...
Newbie question, adding a custom perl script by Mac
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by Mac
Moving Data to New Instance by Robert Chase
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by Hans-Rudolf Hotz-2
Accessing different folder's datasets by CLedero
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by CLedero
Idea for user-based dataset subdirectories by Josh Nielsen
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by Josh Nielsen
Galaxy server configuration question by Huayan Gao
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by Nate Coraor (nate@bx...
Internal Server Error when using Galaxy API by liram_vardi
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by liram_vardi
parameters going into quality scores fastq Illumina by Claudia Gottstein
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by Peter Cock
GCC2012 Update by Dave Clements-2
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by Dave Clements-2
Follow Up by Daniel Patrick Sulli...
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by Daniel Patrick Sulli...
⇝ IOError: [Errno 13] Permission denied: u'/home/koala2/galaxy-central/database/compiled_templates/base_panels.mako.py' by Luciano Cosme
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by Luciano Cosme
Running Galaxy behind apache2 by CHEBBI Mohamed Amine
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by CHEBBI Mohamed Amine
Problem related to a job that "failed" by Kelkar, Hemant
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by Kelkar, Hemant
how is metadata generated by KOH Jia Yu Jayce
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by KOH Jia Yu Jayce
About the creation of a new folder by CLedero
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by CLedero
managing external dependency eggs by Shantanu Pavgi
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by Shantanu Pavgi
May 11, 2012 Galaxy Development News Brief by Jennifer Jackson
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by Jennifer Jackson
POST and WSGI by Nikolai Vazov
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by Nikolai Vazov
cloudman on ubuntu 12.04 by Jorrit Boekel
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by Jorrit Boekel
Re: [galaxy-user] default data for a tool by alex
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by alex
Interested in speaking with other institutions deploying Galaxy locally? by annblack
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by Greg Edwards
Loc file configuration question by Raja Kelkar
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by Federico De Masi-3
Error when exporting history to file by Sarah Diehl
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by Jeremy Goecks
Running Galaxy on PBS/Torque cluster by Dan Dorset
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by Dan Dorset
Installing Galaxy on Mac OS X 10.7: pyglet issue by Arnav Moudgil
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by Nate Coraor (nate@bx...
Submitting Jobs as User by Daniel Patrick Sulli...
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by Daniel Patrick Sulli...
Re: [galaxy-user] Help on installing cutadapt by Tilahun Abebe
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by Nate Coraor (nate@bx...
Server Error when downloading files from history by Rathi D. Thiagarajan
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by Dannon Baker
Trackster - not showing data. by Mohammad Heydarian
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by Jeremy Goecks
debugging jobs in 'new' state by Shantanu Pavgi
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by Peter Cock
permission error by Alex Strunnikov
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by Alex Strunnikov
生物帮半周岁庆典510,开心农场带回办公室!3527 by 生物帮网站
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by 生物帮网站
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