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Galaxy Development List Archive

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Galaxy

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (8627)
Replies Last Post Views
Workflow ID, Galaxy Instance URL, API Key in Galaxy Tool Config by Katherine Beaulieu
1
by John Chilton-4
Galaxy Feature Request: Input naming deficiencies by Ziphozakhe Mashologu
1
by John Chilton-4
workflow import error by Tony Schreiner
1
by John Chilton-4
Problem with conda on galaxy 16.07 by Léo Biscassi
1
by John Chilton-4
Modifying Values in the Database by Katherine Beaulieu
1
by John Chilton-4
compilation fails in pyBamTools & pyBamParser dependency packages by Nikolaos Tur
0
by Nikolaos Tur
why modified workflow doesn't save? by Nikolaos Tur
1
by John Chilton-4
Galaxy cannot restart : python module Crate required but installed with name "crate" by juliech
0
by juliech
Question about Galaxy integration with external access control by Simon Chang
2
by vazovn
CleanUp Datastets ERROR since update from bitbucket to git by juliech
0
by juliech
Modifying a Cloud Cluster Instance by Lapointe, David
8
by Enis Afgan-3
GCC2018: Call for Host Proposals by Dave Clements-2
0
by Dave Clements-2
Re: [galaxy-iuc] GMAP tool_dependencies.xml package for ToolShed by Jim Johnson-3
3
by Jim Johnson-3
how to make an exact clone of the usegalaxy.org by ruiwang.sz
4
by Enis Afgan-3
samtools by ruiwang.sz
2
by Martin Čech
Recommended torque version? by fourie.joubert@up.ac...
0
by fourie.joubert@up.ac...
howto add a controller to Galaxy (sorry for multiple posts) by vazovn
0
by vazovn
trying to add a new controller to webapps/galaxy/controllers by vazovn
0
by vazovn
Docker ToolShed Imports Issue by Yip, Miu ki
1
by Björn Grüning-3
several versions of compiler by Nikolaos Tur
2
by Nikolaos Tur
Galaxy training contribution fest - 6-7th October by Björn Grüning-3
0
by Björn Grüning-3
Galaxy Admin Training: November 7-11, Salt Lake City by Dave Clements-2
1
by Dave Clements-2
unified flavor testing by Björn Grüning-3
0
by Björn Grüning-3
Authentication issue by Mohamed Kassam
2
by Mohamed Kassam
Problem downloading HTML datasets by Stephanie LE GRAS
2
by Stephanie LE GRAS
Can't log in to Galaxy instance using Safari web browser by Stephanie LE GRAS
4
by Stephanie LE GRAS
job_conf.xml and nativespecification by Laure QUINTRIC
1
by Björn Grüning-3
multiqc by Jochen
0
by Jochen
Odd error, solution not understood by Scott Szakonyi
2
by Scott Szakonyi
Trimmomatic tool is not visible in the workflow editor by Amarathunga A. Dinel...
4
by Amarathunga A. Dinel...
Send repeat parameter to code file for multiple select list by Katherine Beaulieu
6
by Katherine Beaulieu
apache on ubuntu by Jochen
10
by Jochen
bowtie2 data_manager issue by Joseph Sarro
0
by Joseph Sarro
Can't display tools in the middle panel of Galaxy by Stephanie LE GRAS
0
by Stephanie LE GRAS
Galaxy Admin Training: November 7-11, Salt Lake City by Dave Clements-2
0
by Dave Clements-2
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