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Galaxy

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (8751)
Replies Last Post Views
Fwd: Fwd: Usegalaxy.org Data Rsync Connection refused by Christopher Previti
4
by Christopher Previti
Python script can't can't import BioPython modules in Galaxy 16.01 by Makis Ladoukakis
8
by Makis Ladoukakis
Update Galaxy from 15.10 to 16.10 by Jochen
2
by Jochen
installing tool dependencies by Jochen
2
by Jochen
Galaxy Australasia Meeting Update: Register now, Poster Abstracts, Training by Dave Clements-2
0
by Dave Clements-2
nginx 502 by pieter coussement
0
by pieter coussement
Fwd: Job: CaliforniaStateU_SanMarcos.PopGenetProgrammer by Dave Clements-2
0
by Dave Clements-2
Request more details from Nikolaos Tur about pyBamTools & pyBamParser dependency packages message by Jennifer Hsieh
2
by Jennifer Hsieh
Nominate the training topics you want to see at GCC2017 by Olivier Inizan-2
0
by Olivier Inizan-2
Wrapper for ballgown by Dueck, Anne
1
by Björn Grüning-3
Dataset Cleanup by McCully, Dwayne (NIH...
3
by Dannon Baker-2
January 2017 News of the Galaxy: Register now for GAMe 2017! by Dave Clements-2
0
by Dave Clements-2
wrapper for tool with multiple outputs by Jochen
4
by Jochen
installation error on venv dependencies.xml by Linda Bakker
0
by Linda Bakker
GalaxyAdmins Online Meetup 15 December by Dave Clements-2
1
by Dave Clements-2
Dump SQlite to mySQL by evan clark
0
by evan clark
psycopg2 module and SSL connection to postgresql by Floreline TOUCHARD
1
by John Chilton-4
GIE security implications by Tamir,Ido
1
by Björn Grüning-3
Groovy tool for galaxy by Anshul Tak
1
by Suderman Keith
installation error on venv dependencies.xml by Linda Bakker
0
by Linda Bakker
Question about Data Managers by Carlos Lijeron
0
by Carlos Lijeron
Job launching slowed down by conda auto-install by Tiago Macedo
1
by Marius van den Beek
tmp file under database/tmp get regenerated after restarting Galaxy by Mark Xiao
1
by Mark Xiao
Tools pick up Python modules from Galaxy core rather than installed tool dependencies by Peter Briggs
3
by Peter Briggs
Connection to mariaDB generates tables, but does not migrate information by evan clark
2
by Hans-Rudolf Hotz
Installation of packages failing by jamesp
6
by Peter Briggs
Speedup Galaxy by Jochen
5
by Nate Coraor (nate@bx...
Galaxy Security Vulnerability - Arbitrary code execution by Nate Coraor (nate@bx...
3
by Daniel Blankenberg
Announcing the October 2016 (v16.10) Galaxy Release by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
devteam dropped support for installing tool dependencies from toolshed? by Peter Briggs
3
by Björn Grüning-3
New datatypes with code dependencies by Cristel Thomas
2
by Cristel Thomas
multiple datatypes input in 16.07 by Cristel Thomas
11
by Aysam Guerler
Testing workflows by Eric Rasche-2
1
by Jelle Scholtalbers
Addind new datatype - best practice by Floreline TOUCHARD
1
by Björn Grüning-3
Broken logo 'src' in masthead for Galaxy 16.07 served from subdirectory by Peter Briggs
2
by Peter Briggs
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