Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9016)
Replies Last Post Views
upload from dropbox by Matthias Bernt
2
by Matthias Bernt
"Edit attributes" for interval dataset not consistent with documentation by Peter Briggs
0
by Peter Briggs
No legal value defined in a planemo test for param type="select" and options="from_file" by Olivier Inizan-2
3
by Peter Cock
Cluster Install Path Errors by jletaw667
1
by Peter Cock
Error at the end of a BWA job by SAPET, Frederic
2
by SAPET, Frederic
User Registration Error by ThomasD
2
by Martin Čech
Problem with dependencies: Conda/freebayes by M_Enders
4
by M_Enders
Problems installing conda dependencies for seq2hla tool by Peter Briggs
1
by Peter Briggs
Galaxy v17.09 impersonation doesn't work by Ping
4
by Ping
tool publishing by Matthias Bernt
5
by Marius van den Beek
intended behaviour for multiple data sets by Matthias Bernt
2
by Matthias Bernt
History Share : options by Christophe Caron-2
1
by Jennifer Hillman-Jac...
Network errors when downloading files by Van Der Pol William
2
by Van Der Pol William
Dynamic Tool UI based on script by evan clark
7
by Steve Cassidy
Galaxy moves files form job directory but attempts to look for them at original path by Evan Clark-2
1
by John Chilton-4
TR: Close cluster by Arnaud Cheuk
1
by Enis Afgan-3
external display and data editing by Nils Paulhe
4
by Deepak Tanwar
GMOD hackathon before PAG San Diego in January by Scott Cain
1
by Scott Cain
broken after upgrade to 17.09 : uploading files via the API by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
European Galaxy Administrator Workshop, 8-12 January 2018, Oslo. FREE by Dave Clements-2
0
by Dave Clements-2
tool dependencies by Matthias Bernt
0
by Matthias Bernt
Active Directory Authentication question by Hakeem Almabrazi-2
4
by Hakeem Almabrazi-2
Fwd: Job Script Integrity with GalaxyKickStart (galaxy-dev Digest, Vol 137, Issue 5) by Christophe Antoniews...
6
by jletaw667
AWS launch error by David Kovalic
4
by Nuwan Goonasekera-2
Delete a record from a Tool Data Table via the Galaxy API by Dan Fornika
0
by Dan Fornika
Job Script Integrity by jletaw667
0
by jletaw667
Diffbind error by Beginner TI
0
by Beginner TI
html with styles by Wolfgang Maier
5
by Wolfgang Maier
Upload tool incorrect path by evan clark
0
by evan clark
Enable viewing of large HTML files by Peter Briggs
2
by Peter Briggs
AWS launch error by Sijung Yun
1
by Enis Afgan-3
bam_to_bigwig invalid syntax error by Marco Tangaro
1
by Nicola Soranzo-2
Metadata setting python dependencies by Ulf
5
by Ulf
GX-2017-0001: Limited Galaxy Data Library unauthorized filesystem access by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Urgent help needed by Durdevic, Marija
7
by Deepak Tanwar
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