Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9089)
Replies Last Post Views
Expose Command Line in Galaxy by M_Enders
12
by M_Enders
Conda problems: Failed to activate conda environment by Van Wageningen, GERH...
12
by Van Wageningen, GERH...
AMD EPYC and Galaxy by Van Wageningen, GERH...
0
by Van Wageningen, GERH...
Error with SAMTools Mpileup v1.2 by Aarthi Mohan-2
0
by Aarthi Mohan-2
From Paste to uWSGI by Jochen
3
by Jochen
Strange error in galaxy by Evan Clark-2
0
by Evan Clark-2
REST API api/tools by Dmitry
0
by Dmitry
jobs not running with galaxy.yml by Matthias Bernt
0
by Matthias Bernt
Unable to install tools from toolshed/mercurial issue in release_18.05 instance by Peter Briggs
2
by Peter Briggs
MySQL errors and warnings with a fresh install of Galaxy 18-05 by SAPET, Frederic
4
by SAPET, Frederic
instance management inspiration by Matthias Bernt
3
by Björn Grüning-3
pbs/torque jobs by Briand, Sheldon (NRC...
10
by Marius van den Beek
Conflicting conda dependencies for Galaxy tool by Peter Briggs
0
by Peter Briggs
python: error while loading shared libraries by Floreline TOUCHARD
0
by Floreline TOUCHARD
job deletion by Matthias Bernt
0
by Matthias Bernt
galaxy upgrade 18.05 problem by Matthias Bernt
1
by Martin Čech
Permanently deleting users from a Galaxy instance by Peter Briggs
2
by Peter Briggs
problem with Visualization 'Scatterplot' in 18.05 by Hans-Rudolf Hotz
4
by Hans-Rudolf Hotz
Uploads via Nginx proxy fail after upgrade to current release by Hans-Georg Sommer
2
by Ignacio EGUINOA
Job Script Integrity by jletaw667
1
by John Chilton-4
tabular data display by Matthias Bernt
4
by Matthias Bernt
argparse -> tool xml advice by Matthias Bernt
8
by Matthias Bernt
Conda problem by David Lee
3
by Peter Cock
Workflow renaming problem for tool with multiple outputs (Galaxy version 17.09) by Previti
0
by Previti
Purging "Monitor installing repositories" by Previti
0
by Previti
Text file busy and conda by jletaw667
2
by jletaw667
Trackster ownership issue by Previti
5
by Dannon Baker-2
V18.01 'View all histories' doesn't work by Ping
5
by Dannon Baker-2
Tool to download galaxy datasets locally by evan clark
3
by evan clark
ELIXIR Workshop for Galaxy training material and skills improvement by Nicola Soranzo-2
0
by Nicola Soranzo-2
Best practices for utilising Unique Molecular Indexing (UMI's) by BigTA78
6
by BigTA78
extract extra info (logs) from history by Jochen
7
by Devon Ryan-2
Gateways 2018 Call for Participation: Extended to May 16 by Katherine Lawrence
0
by Katherine Lawrence
tool_conf.xml by Nancy Ide
2
by Nancy Ide
Galaxy Cleanup by Previti
3
by Previti
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