Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9199)
Replies Last Post Views
Errors running jobs in Galaxy 16.01 with slurm-drmaa 1.1.0 by Philip Blood
3
by Philip Blood
pbs-python issues by Sandra Maksimovic
7
by Galaxy Development L...
Job going in Melbourne for Galaxy Australia by Simon Gladman-2
0
by Simon Gladman-2
set up an asynchronous data source in galaxy by Galaxy Development L...
2
by Galaxy Development L...
upload issues with gff3.gz files. by Galaxy Development L...
0
by Galaxy Development L...
Gateways 2019 (San Diego): Register by Sept. 9 -- Keynote by James Taylor of Galaxy! by Katherine Lawrence
0
by Katherine Lawrence
King Skrupellos hack by Gillevet Patrick
3
by Daniel Blankenberg-2
hudge size of _cleared_contents dir in job_working_directory by Franck Giacomoni
0
by Franck Giacomoni
Error when installing from toolshed by Nancy Ide-2
8
by Nancy Ide-2
Installing SOAPdenovo tools by Peter Briggs
0
by Peter Briggs
conda not installing deps. by Jochen
4
by Gildas Le Corguillé
Memory limit for a Travis CI build by Jin Li
2
by Jin Li
Installing a database on local instance Galaxy by goutham sarovaram
1
by Björn Grüning-3
How to resolve the dependency of self-compiled C++ programs when publishing a tool? by Jin Li
10
by Galaxy Development L...
trouble running the new galaxy instance by Jochen
2
by Jochen
backing up old histories by Gillevet Patrick
0
by Gillevet Patrick
2 accounts by mistake by Galaxy Development L...
1
by Jennifer Hillman-Jac...
Still problems running ML tools from toolshed by Nancy Ide-2
0
by Nancy Ide-2
Bismark - Bug in Bismark Pretty Report ? by Previti
1
by Previti
Error during tool installation: "inotify instance limit reached" by Previti
2
by Previti
Error by Nancy Ide-2
6
by Nancy Ide-2
Report an error by Fernanda Manaia Dema...
0
by Fernanda Manaia Dema...
Can't upload xlsx data from Firefox Quantum? by Steven Shen
0
by Steven Shen
Error by Nancy Ide-2
0
by Nancy Ide-2
New to supporting Galaxy (local deployment) seeking help related to upload problem and log file locations by zemay
2
by zemay
set metadata resubmission by Matthias Bernt
0
by Matthias Bernt
Workflow assigning columns on output causes "Uncaught exception in exposed API method" by Peter Briggs
2
by Peter Briggs
samtools_slice_bam/2.0.1 no options available by Eric Kuyt-2
3
by Martin Čech
new datasets appear in database/files/000/ by Jochen
2
by Dannon Baker-2
Re: galaxy-dev Digest, Vol 155, Issue 3 by Matthias Bernt
1
by Jochen
URL prefix doesn't work properly in Galaxy v18.09 by Ping
3
by Ping
Tagging collection datasets from file with hashtags by Charles Girardot
0
by Charles Girardot
Share Docker Volumes when integrating Containers in Galaxy by Schäfer, Richard
1
by Galaxy Development L...
Galaxy jobs on Apache Mesos with chronos.py runner by Pietro Mandreoli
1
by John Chilton-4
Random failed job after update 18.05 -> 19.01 by Edouard Hirchaud
0
by Edouard Hirchaud
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