Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (8983)
Replies Last Post Views
Urgent help needed by Durdevic, Marija
7
by Deepak Tanwar
contribute to tools without github by Matthias Bernt
1
by Peter Cock
Re: galaxy-dev Digest, Vol 136, Issue 11 by M_Enders
0
by M_Enders
error despite success by Matthias Bernt
6
by Devon Ryan-2
Problems with BlastDB.loc by Enders Matthias
1
by Peter Cock
Re: galaxy-dev Digest, Vol 136, Issue 8 by M_Enders
6
by Hans-Rudolf Hotz
Problems with the test tool shed? by Von Kuster, Greg
1
by Martin Čech
primer blast tool by Jochen
0
by Jochen
Call for presentations at GMOD workshop at PAG by Scott Cain
0
by Scott Cain
GMOD hackathon before PAG San Diego in January by Scott Cain
0
by Scott Cain
Show history structure : Error 'Undefined' object is not callable by juliech
1
by Marius van den Beek
another conda problem by Matthias Bernt
0
by Matthias Bernt
conda bash environment problem as real user by Matthias Bernt
1
by Gildas Le Corguillé
Announcing the Galactic Blog, and a call for posts by Dave Clements-2
0
by Dave Clements-2
Worklist failing on collection with AttributeError: 'object' object has no attribute 'collection' by BigTA78
2
by Marius van den Beek
WebDAV client Galaxy by Mohamed Kassam
0
by Mohamed Kassam
Toolshed partial installation ? deeptools error by juliech
7
by juliech
data_manager_gatk_picard_index_builder "no space left" by Laurent Fournier
0
by Laurent Fournier
Pause queued jobs by Lachlan Musicman
0
by Lachlan Musicman
show tool errors admin interface by Previti
0
by Previti
Docker Galaxy & HISAT2: ValueError: Parameter index requires a value, but has no legal values defined. by Peter van Heusden
0
by Peter van Heusden
Re: upload file format is data - type not recognized in, galaxy by Evan
1
by Pavel Fibich
resubmission on out of memory by Matthias Bernt
3
by Marius van den Beek
Changing $galaxy_lib Variable by evan clark
0
by evan clark
Cron Job Tool by Mohamed Kassam
1
by John Chilton-4
Galaxy server requires a restart to activate tools by RMSe17
4
by RMSe17
Galaxy cloud azur by Mohamed Kassam
1
by Enis Afgan-3
upload file format is data - type not recognized in galaxy by Pavel Fibich
5
by Pavel Fibich
Question about "reference_fasta_filename" for "Map with BWA" (existing tool) by Qian, Yingzhi
0
by Qian, Yingzhi
Displaying tool select list according to user by Laure QUINTRIC
13
by Mohamed Kassam
galaxy behind firewall by Matthias Bernt
3
by Daniel Blankenberg-2
Deprecation of Sample Tracking and External Services by Aysam Guerler
0
by Aysam Guerler
Dependencies issue with tool installation via ephemeris by RMSe17
6
by Björn Grüning-3
tool runtimes by Matthias Bernt
0
by Matthias Bernt
installation/conda problems by Matthias Bernt
3
by Matthias Bernt
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