Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9110)
Replies Last Post Views
Using Singularity images to resolve dependences in Galaxy 18.05 by Peter van Heusden
2
by Peter van Heusden
Issue with deseq2 by Previti
3
by Previti
"Merging tabular data tables with non-matching columns is not allowed" by Peter van Heusden
6
by Peter van Heusden
Update from 17.10 to 18.05 by Jochen
1
by Dannon Baker-2
good practice for Galaxy admin and updates ? by juliech
3
by Keith Suderman
Salmon references and data manager by Previti
3
by Previti
Local galaxy of release_18.05 is too slow by 沈维燕(Steven Shen)
0
by 沈维燕(Steven Shen)
galaxy config from 17.05 to 18.05 by fernandez Edgar
1
by fernandez Edgar
Monitoring Dashboard for Galaxy by evan clark
3
by Hans-Rudolf Hotz
collections with more than 25,000 items by Jochen
4
by Mohammad Heydarian-2
java options by Matthias Bernt
4
by Matthias Bernt
European Galaxy Days, 19/20 November 2018 in Freiburg, Germany. by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
Permanently Deleted Data by Emm L
1
by Björn Grüning-3
tool datatypes by Matthias Bernt
7
by Peter Cock
Unable to install tools from toolshed/mercurial issue in release_18.05 instance by Peter Briggs
3
by jletaw667
one dataset won't import by Langhorst, Brad
0
by Langhorst, Brad
links to UCSC Genome Browser dev server by Dave Clements-2
0
by Dave Clements-2
Native LDAP auth to AD by RSD
0
by RSD
Gateways 2018: Early-bird ENDS Aug. 6; Poster Session EXTENSION to Aug. 15 by Katherine Lawrence
0
by Katherine Lawrence
Hierarchical upload API documentation and example by Lance Parsons
1
by E. Rasche
Local Galaxy Instance Error: "enable third-party cookies" they're enabled already! by David Halvorsen
0
by David Halvorsen
Installing Tool Dependencies by Tom Misilo
6
by Gudrun Mareike Amedi...
Expose Command Line in Galaxy by M_Enders
13
by M_Enders
Conda problems: Failed to activate conda environment by Van Wageningen, GERH...
12
by Van Wageningen, GERH...
AMD EPYC and Galaxy by Van Wageningen, GERH...
0
by Van Wageningen, GERH...
Error with SAMTools Mpileup v1.2 by Aarthi Mohan-2
0
by Aarthi Mohan-2
uWSGI threading issue by Durdevic, Marija
0
by Durdevic, Marija
From Paste to uWSGI by Jochen
3
by Jochen
Strange error in galaxy by Evan Clark-2
0
by Evan Clark-2
REST API api/tools by Dmitry
0
by Dmitry
jobs not running with galaxy.yml by Matthias Bernt
0
by Matthias Bernt
MySQL errors and warnings with a fresh install of Galaxy 18-05 by SAPET, Frederic
4
by SAPET, Frederic
instance management inspiration by Matthias Bernt
3
by Björn Grüning-3
pbs/torque jobs by Briand, Sheldon (NRC...
10
by Marius van den Beek
Conflicting conda dependencies for Galaxy tool by Peter Briggs
0
by Peter Briggs
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