Attempting to bind to AMQP message queue, but kombu dependency unavailable

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Attempting to bind to AMQP message queue, but kombu dependency unavailable

Peter Cock
Hi all,

I just updated my development server, and ran into what looks
like a missing dependency:

$ ./run.sh
...
galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins
galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers
galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers
Traceback (most recent call last):
  File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__
    self.job_manager = manager.JobManager( self )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__
    self.job_handler = handler.JobHandler( app )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__
    self.dispatcher = DefaultJobDispatcher( app )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576, in __init__
    self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496, in get_job_runner_plugins
    rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__
    self.client_manager = build_client_manager(**client_manager_kwargs)
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 41, in build_client_manager
    return MessageQueueClientManager(**kwargs)
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 89, in __init__
    self.exchange = LwrExchange(self.url, self.manager_name)
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py", line 37, in __init__
    raise Exception(KOMBU_UNAVAILABLE)
Exception: Attempting to bind to AMQP message queue, but kombu dependency unavailable


$ hg summary
parent: 13557:75b13d642f94 tip
 Allow LWR runner to publish/consume messages via message queue.
branch: default
commit: 9 modified, 240 unknown
update: (current)

(Local modifications mostly extra logging lines; nothing which
looked relevant here)

Regards,

Peter


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Re: Attempting to bind to AMQP message queue, but kombu dependency unavailable

Peter Cock
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <[hidden email]> wrote:
Hi all,

I just updated my development server, and ran into what looks
like a missing dependency:

$ ./run.sh
...
galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins
galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers
galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers
Traceback (most recent call last):
  File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__
    self.job_manager = manager.JobManager( self )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__
    self.job_handler = handler.JobHandler( app )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__
    self.dispatcher = DefaultJobDispatcher( app )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576, in __init__
    self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496, in get_job_runner_plugins
    rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) )
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__
    self.client_manager = build_client_manager(**client_manager_kwargs)
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 41, in build_client_manager
    return MessageQueueClientManager(**kwargs)
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 89, in __init__
    self.exchange = LwrExchange(self.url, self.manager_name)
  File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py", line 37, in __init__
    raise Exception(KOMBU_UNAVAILABLE)
Exception: Attempting to bind to AMQP message queue, but kombu dependency unavailable


$ hg summary
parent: 13557:75b13d642f94 tip
 Allow LWR runner to publish/consume messages via message queue.
branch: default
commit: 9 modified, 240 unknown
update: (current)

(Local modifications mostly extra logging lines; nothing which
looked relevant here)

Regards,

Peter


Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
https://travis-ci.org/peterjc/pico_galaxy/builds/19101036

Peter


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Re: Attempting to bind to AMQP message queue, but kombu dependency unavailable

John Chilton-4
That should be fixed now, sorry about that.

-John

On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock <[hidden email]> wrote:

> On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <[hidden email]>
> wrote:
>>
>> Hi all,
>>
>> I just updated my development server, and ran into what looks
>> like a missing dependency:
>>
>> $ ./run.sh
>> ...
>> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
>> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
>> configured runner plugins
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
>> workers
>> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
>> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
>> workers
>> Traceback (most recent call last):
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
>> line 39, in app_factory
>>     app = UniverseApplication( global_conf = global_conf, **kwargs )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
>> __init__
>>     self.job_manager = manager.JobManager( self )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
>> in __init__
>>     self.job_handler = handler.JobHandler( app )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
>> in __init__
>>     self.dispatcher = DefaultJobDispatcher( app )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
>> in __init__
>>     self.job_runners = self.app.job_config.get_job_runner_plugins(
>> self.app.config.server_name )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
>> in get_job_runner_plugins
>>     rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
>> 'kwds', {} ) )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
>> 45, in __init__
>>     self.client_manager = build_client_manager(**client_manager_kwargs)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 41, in build_client_manager
>>     return MessageQueueClientManager(**kwargs)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 89, in __init__
>>     self.exchange = LwrExchange(self.url, self.manager_name)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
>> line 37, in __init__
>>     raise Exception(KOMBU_UNAVAILABLE)
>> Exception: Attempting to bind to AMQP message queue, but kombu dependency
>> unavailable
>>
>>
>> $ hg summary
>> parent: 13557:75b13d642f94 tip
>>  Allow LWR runner to publish/consume messages via message queue.
>> branch: default
>> commit: 9 modified, 240 unknown
>> update: (current)
>>
>> (Local modifications mostly extra logging lines; nothing which
>> looked relevant here)
>>
>> Regards,
>>
>> Peter
>
>
>
> Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
>
> Peter
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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Re: Attempting to bind to AMQP message queue, but kombu dependency unavailable

Peter Cock
Hi John,

Fix confirmed - nice timing, I just finished my lunch break :)

Thanks!

Peter


On Tue, Feb 18, 2014 at 12:35 PM, John Chilton <[hidden email]> wrote:
That should be fixed now, sorry about that.

-John

On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock <[hidden email]> wrote:
> On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <[hidden email]>
> wrote:
>>
>> Hi all,
>>
>> I just updated my development server, and ran into what looks
>> like a missing dependency:
>>
>> $ ./run.sh
>> ...
>> galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler
>> galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all
>> configured runner plugins
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner
>> workers
>> galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner
>> 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'
>> galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner
>> workers
>> Traceback (most recent call last):
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
>> line 39, in app_factory
>>     app = UniverseApplication( global_conf = global_conf, **kwargs )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in
>> __init__
>>     self.job_manager = manager.JobManager( self )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31,
>> in __init__
>>     self.job_handler = handler.JobHandler( app )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31,
>> in __init__
>>     self.dispatcher = DefaultJobDispatcher( app )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576,
>> in __init__
>>     self.job_runners = self.app.job_config.get_job_runner_plugins(
>> self.app.config.server_name )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496,
>> in get_job_runner_plugins
>>     rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get(
>> 'kwds', {} ) )
>>   File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line
>> 45, in __init__
>>     self.client_manager = build_client_manager(**client_manager_kwargs)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 41, in build_client_manager
>>     return MessageQueueClientManager(**kwargs)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
>> line 89, in __init__
>>     self.exchange = LwrExchange(self.url, self.manager_name)
>>   File
>> "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
>> line 37, in __init__
>>     raise Exception(KOMBU_UNAVAILABLE)
>> Exception: Attempting to bind to AMQP message queue, but kombu dependency
>> unavailable
>>
>>
>> $ hg summary
>> parent: 13557:75b13d642f94 tip
>>  Allow LWR runner to publish/consume messages via message queue.
>> branch: default
>> commit: 9 modified, 240 unknown
>> update: (current)
>>
>> (Local modifications mostly extra logging lines; nothing which
>> looked relevant here)
>>
>> Regards,
>>
>> Peter
>
>
>
> Also (not unexpectedly) breaking my TravisCI tool tests, e.g.
> https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
>
> Peter
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/