We are trying to connect a Galaxy web server to a remote cluster by using the "CLI" approach.
We do partially succeed : jobs are submitted to the cluster but seem not to be monitored. That is, jobs are executed on the cluster but Galaxy doesn’t update the status in the history (stays grey) and never gets back the outputs.
The Galaxy folder on the cluster is mounted to the Galaxy Server using sshfs :
sshfs [hidden email]:galaxy galaxy
Galaxy (v18.05) is launched by a “sh run.sh” in the galaxy folder, from the Galaxy server side.
Did we miss something in the configuration? Or do we have to write additional code?
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: