Cloning state when installing tools.

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Cloning state when installing tools.

Carlos Lijeron

Everyone,

 

I’ve been encountering problems when installing particular tools in a local Galaxy instance.  One such tool is Cummerbund as you can see in link below:

 

https://www.dropbox.com/s/bmg4qcci97ayq2k/Cloning%20State.JPG?dl=0

 

Would you have a suggestion on how to troubleshoot failed tool installations that do not give an output error message?

 

Thank you all !

 

 

Carlos.


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Re: Cloning state when installing tools.

John Chilton-4
Hello Carlos,

  I think we have had reports of problems installing say the newest
tophat tool on older Galaxy versions because it uses newer features
the older Galaxy and tool shed install code doesn't know how to
handle. I see the cummerbund wrapper is using some stuff added over
the last 18 months (the discovered_datasets tag on an output). Is it
possible you are using an older Galaxy and can update?

  Otherwise - it might be worth trying to uninstall and reinstall? It
would also be good if you post the relevant parts of the Galaxy logs
during the install (this is how we tracked down the tophat issues).

-John



On Wed, Mar 11, 2015 at 4:15 PM, Carlos Lijeron
<[hidden email]> wrote:

> Everyone,
>
>
>
> I’ve been encountering problems when installing particular tools in a local
> Galaxy instance.  One such tool is Cummerbund as you can see in link below:
>
>
>
> https://www.dropbox.com/s/bmg4qcci97ayq2k/Cloning%20State.JPG?dl=0
>
>
>
> Would you have a suggestion on how to troubleshoot failed tool installations
> that do not give an output error message?
>
>
>
> Thank you all !
>
>
>
>
>
> Carlos.
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/