Data manager for ncbi_blast_plus in the main tool shed?

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Data manager for ncbi_blast_plus in the main tool shed?

David Kovalic
Hi,

Does anyone know if a data manager exists in the tool shed for creating and integrating NCBI BLAST+ indices within galaxy?

I can't seem to find it in the tools shed or searching the internet  Surly such a tool must exist.

Any info would be greatly appreciated.

Thanks,

David



David Kovalic Ph.D.   PresidentAnalome
phone: +314.496.8808


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Re: Data manager for ncbi_blast_plus in the main tool shed?

Peter Cock
Hi David,

Daniel Blankenberg wrote one (CC'd):

https://github.com/peterjc/galaxy_blast/tree/master/data_managers/ncbi_blastdb


I've never used it in production and don't have enough understanding
of it and the Data Manager framework to understand what if anything
needs working on.

Locally we have mirrors of the NCBI blast databases (updated with cron),
local databases for organisms of interest - these are all listed in the *.loc
files by hand.

Separately, our users can and do make their own databases within
Galaxy using makeblastdb.

Regards,

Peter

On Thu, Aug 10, 2017 at 10:32 PM, David Kovalic <[hidden email]> wrote:
Hi,

Does anyone know if a data manager exists in the tool shed for creating and integrating NCBI BLAST+ indices within galaxy?

I can't seem to find it in the tools shed or searching the internet  Surly such a tool must exist.

Any info would be greatly appreciated.

Thanks,

David



David Kovalic Ph.D.   PresidentAnalome
phone: +314.496.8808


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/
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