Data manager for the BLAST database *.loc files?

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Data manager for the BLAST database *.loc files?

Peter Cock
Hi Daniel,

Would you be OK with me/us incorporating your example
Galaxy Data Manager [1] for NCBI BLAST databases
http://testtoolshed.g2.bx.psu.edu/view/blankenberg/data_manager_example_blastdb_ncbi_update_blastdb
into the Galaxy BLAST wrappers repository
https://github.com/peterjc/galaxy_blast/
under the MIT licence, and then extending it?

If you have a GitHub account I can do that as a commit
with you as the author to make the attribution explicit.

See also https://github.com/peterjc/galaxy_blast/issues/22
where we're discussing this issue.

Thanks,

Peter

[1] This is described in Daniel's new paper,

Blankenberg et al (2014) Wrangling Galaxy's reference data
http://dx.doi.org/10.1093/bioinformatics/btu119

and the Galaxy wiki:

https://wiki.galaxyproject.org/Admin/Tools/DataManagers
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Re: Data manager for the BLAST database *.loc files?

Daniel Blankenberg
Hi Peter,

It would be great to have the BLAST tools use tool data tables and Data Managers. Let me know what I can do to help.


Thanks,

Dan


On Apr 7, 2014, at 11:48 AM, Peter Cock <[hidden email]> wrote:

> Hi Daniel,
>
> Would you be OK with me/us incorporating your example
> Galaxy Data Manager [1] for NCBI BLAST databases
> http://testtoolshed.g2.bx.psu.edu/view/blankenberg/data_manager_example_blastdb_ncbi_update_blastdb
> into the Galaxy BLAST wrappers repository
> https://github.com/peterjc/galaxy_blast/
> under the MIT licence, and then extending it?
>
> If you have a GitHub account I can do that as a commit
> with you as the author to make the attribution explicit.
>
> See also https://github.com/peterjc/galaxy_blast/issues/22
> where we're discussing this issue.
>
> Thanks,
>
> Peter
>
> [1] This is described in Daniel's new paper,
>
> Blankenberg et al (2014) Wrangling Galaxy's reference data
> http://dx.doi.org/10.1093/bioinformatics/btu119
>
> and the Galaxy wiki:
>
> https://wiki.galaxyproject.org/Admin/Tools/DataManagers


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Re: Data manager for the BLAST database *.loc files?

Peter Cock
On Mon, Apr 7, 2014 at 5:38 PM, Daniel Blankenberg <[hidden email]> wrote:
> Hi Peter,
>
> It would be great to have the BLAST tools use tool data tables and
> Data Managers. Let me know what I can do to help.
>
> Thanks,
>
> Dan

That's great Dan - I see you've commented on GitHub, so we can
continue this there: https://github.com/peterjc/galaxy_blast/issues/22

Thanks,

Peter
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