Dependencies within dependencies

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Dependencies within dependencies

Christophe Antoniewski-2
I am trying to move the package_r_3_0_3 repository owned by devteam from the main toolshed to our local toolshed.
This does not work as some dependencies required for package_r_3_0_3 are not exported (export capsule)  and not included in the archive.
For instance, package_freetype_2_5_2 and package_libpng_1_6_7 are present in the capsule and thus moved to the local toolshed, but not package_readline_6_2, package_cairo_1_12_14 and package_pixman_0_32_4.

Is it a bug (I would expect a sort of recursivity in the export process) or did I miss some logics behind this ? And do we have to manually export-import the missing dependencies to the local toolshed ?

Cheers

Chris


Christophe Antoniewski


Drosophila Genetics and Epigenetics
Laboratoire de Biologie du Développement
9, Quai St Bernard, Boîte courrier 24
75252 Paris Cedex 05
[hidden email]
http://bio-dev.snv.jussieu.fr/

Tel +33 1 44 27 34 39
Fax +33 1 44 27 34 45
Mobile +33 6 68 60 51 50

http://drosophile.org

http://www.sciencesenmarche.org/


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Re: Dependencies within dependencies

Ross-2
Hi Christophe - there's a trello card for this at https://trello.com/c/ClgcV0Sn - upvote and add your experiences please?


On Wed, Sep 17, 2014 at 8:01 AM, Christophe Antoniewski <[hidden email]> wrote:
I am trying to move the package_r_3_0_3 repository owned by devteam from the main toolshed to our local toolshed.
This does not work as some dependencies required for package_r_3_0_3 are not exported (export capsule)  and not included in the archive.
For instance, package_freetype_2_5_2 and package_libpng_1_6_7 are present in the capsule and thus moved to the local toolshed, but not package_readline_6_2, package_cairo_1_12_14 and package_pixman_0_32_4.

Is it a bug (I would expect a sort of recursivity in the export process) or did I miss some logics behind this ? And do we have to manually export-import the missing dependencies to the local toolshed ?

Cheers

Chris


Christophe Antoniewski


Drosophila Genetics and Epigenetics
Laboratoire de Biologie du Développement
9, Quai St Bernard, Boîte courrier 24
75252 Paris Cedex 05
[hidden email]
http://bio-dev.snv.jussieu.fr/

Tel +33 1 44 27 34 39
Fax +33 1 44 27 34 45
Mobile +33 6 68 60 51 50

http://drosophile.org

http://www.sciencesenmarche.org/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
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