Diffbind error

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Diffbind error

Rui Wang
Hi Folks,

I found one problem with the docker galaxy instance we have. While we are trying to run Diffbind tool, it failed to create the env for the tool.  The error is

Conda dependency seemingly installed but failed to build job environment.

I saw the env is defined in envs/__bioconductor-diffbind\@2.0.9, so I tried the following:

conda list --name __bioconductor-diffbind\@2.0.9 --export > file1
conda create -y --unknown --offline  --prefix diff_env --file file1 > /dev/null

basically I was trying to manually create the env for this tool and see if it works. file1 was generated ok but the second command returns:

UnsatisfiableError: The following specifications were found to be in conflict:
  - bioconductor-annotate 1.50.0 r3.3.2_1
  - krb5 1.13.2 0
Use "conda info <package>" to see the dependencies for each package.

Have anyone seen this before?


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