Error when searching for tools in local instance.

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Error when searching for tools in local instance.

Perez, Ricardo
Dear All,

When I go to my Galaxy Distibution I go the following place:
Admin -> Manage installed tool shed repositories

When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug):

URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
  app_iter = self.application(environ, sr_checker)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
  return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
  return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
  return self.handle_request( environ, start_response )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request
  body = method( trans, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator
  return func( self, trans, *args, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories
  return self.installed_repository_grid( trans, **kwd )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__
  query = column.filter( trans, trans.user, query, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter
  clause_list.append( column.get_filter( trans, user, column_filter ) )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter
  return self.get_single_filter( user, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter
  if self.key.find( '.' ) > -1:
AttributeError: 'NoneType' object has no attribute 'find'

How would I go to fix this.

Thank you,
--Ricardo Perez
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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Re: Error when searching for tools in local instance.

Aysam Guerler
Hi Ricardo,

Are you using the newest version from the stable branch or from default?

Thanks,
Sam


On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo <[hidden email]> wrote:
Dear All,

When I go to my Galaxy Distibution I go the following place:
Admin -> Manage installed tool shed repositories

When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug):

URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
  app_iter = self.application(environ, sr_checker)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
  return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
  return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
  return self.handle_request( environ, start_response )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request
  body = method( trans, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator
  return func( self, trans, *args, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories
  return self.installed_repository_grid( trans, **kwd )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__
  query = column.filter( trans, trans.user, query, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter
  clause_list.append( column.get_filter( trans, user, column_filter ) )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter
  return self.get_single_filter( user, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter
  if self.key.find( '.' ) > -1:
AttributeError: 'NoneType' object has no attribute 'find'

How would I go to fix this.

Thank you,
--Ricardo Perez
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Error when searching for tools in local instance.

Perez, Ricardo
Hello Sam,

I believe we are using the default branch.
I will try to change branches now.

Thank you,
--Ricardo Perez

----- Original Message -----
From: "sam guerler" <[hidden email]>
To: "Ricardo Perez" <[hidden email]>
Cc: "Galaxy-dev Galaxy-dev" <[hidden email]>
Sent: Tuesday, January 21, 2014 3:19:07 PM
Subject: Re: [galaxy-dev] Error when searching for tools in local instance.


Hi Ricardo,


Are you using the newest version from the stable branch or from default?


Thanks,
Sam



On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo < [hidden email] > wrote:


Dear All,

When I go to my Galaxy Distibution I go the following place:
Admin -> Manage installed tool shed repositories

When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug):

URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search 
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
app_iter = self.application(environ, sr_checker)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
return self.handle_request( environ, start_response )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request
body = method( trans, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator
return func( self, trans, *args, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories
return self.installed_repository_grid( trans, **kwd )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__
query = column.filter( trans, trans.user, query, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter
clause_list.append( column.get_filter( trans, user, column_filter ) )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter
return self.get_single_filter( user, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter
if self.key.find( '.' ) > -1:
AttributeError: 'NoneType' object has no attribute 'find'

How would I go to fix this.

Thank you,
--Ricardo Perez
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/ 

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/ 

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Error when searching for tools in local instance.

Aysam Guerler
Hey Ricardo,

Did that fix your issue? Does the problem occur in one of the branches? If yes, please let me know which one.

Thanks,
Sam


On Wed, Jan 22, 2014 at 10:51 AM, Perez, Ricardo <[hidden email]> wrote:
Hello Sam,

I believe we are using the default branch.
I will try to change branches now.

Thank you,
--Ricardo Perez

----- Original Message -----
From: "sam guerler" <[hidden email]>
To: "Ricardo Perez" <[hidden email]>
Cc: "Galaxy-dev Galaxy-dev" <[hidden email]>
Sent: Tuesday, January 21, 2014 3:19:07 PM
Subject: Re: [galaxy-dev] Error when searching for tools in local instance.


Hi Ricardo,


Are you using the newest version from the stable branch or from default?


Thanks,
Sam



On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo < [hidden email] > wrote:


Dear All,

When I go to my Galaxy Distibution I go the following place:
Admin -> Manage installed tool shed repositories

When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug):

URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
app_iter = self.application(environ, sr_checker)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
return self.handle_request( environ, start_response )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request
body = method( trans, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator
return func( self, trans, *args, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories
return self.installed_repository_grid( trans, **kwd )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__
query = column.filter( trans, trans.user, query, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter
clause_list.append( column.get_filter( trans, user, column_filter ) )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter
return self.get_single_filter( user, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter
if self.key.find( '.' ) > -1:
AttributeError: 'NoneType' object has no attribute 'find'

How would I go to fix this.

Thank you,
--Ricardo Perez
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/
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Re: Error when searching for tools in local instance.

Perez, Ricardo
Hi Sam,

No it did not fix the issue.  When I checked we were in fact in the stable branch.

I am sorry for my delayed response,
--Ricardo Perez

----- Original Message -----
From: "sam guerler" <[hidden email]>
To: "Ricardo Perez" <[hidden email]>
Cc: "Galaxy-dev Galaxy-dev" <[hidden email]>
Sent: Friday, January 24, 2014 5:21:56 PM
Subject: Re: [galaxy-dev] Error when searching for tools in local instance.


Hey Ricardo,


Did that fix your issue? Does the problem occur in one of the branches? If yes, please let me know which one.


Thanks,
Sam



On Wed, Jan 22, 2014 at 10:51 AM, Perez, Ricardo < [hidden email] > wrote:


Hello Sam,

I believe we are using the default branch.
I will try to change branches now.

Thank you,
--Ricardo Perez



----- Original Message -----
From: "sam guerler" < [hidden email] >
To: "Ricardo Perez" < [hidden email] >
Cc: "Galaxy-dev Galaxy-dev" < [hidden email] >
Sent: Tuesday, January 21, 2014 3:19:07 PM
Subject: Re: [galaxy-dev] Error when searching for tools in local instance.


Hi Ricardo,


Are you using the newest version from the stable branch or from default?


Thanks,
Sam



On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo < [hidden email] > wrote:


Dear All,

When I go to my Galaxy Distibution I go the following place:
Admin -> Manage installed tool shed repositories

When I search for a tool in here with the provided search bar, I get the following (I believe this is a bug):

URL: https://galaxy.tamu.edu/admin_toolshed/browse_repositories?async=false&sort=name&page=1&show_item_checkboxes=false&f-deleted=False&f-free-text-search=search 
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__
app_iter = self.application(environ, sr_checker)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__
return self.handle_request( environ, start_response )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request
body = method( trans, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 229 in decorator
return func( self, trans, *args, **kwargs )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 153 in browse_repositories
return self.installed_repository_grid( trans, **kwd )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 138 in __call__
query = column.filter( trans, trans.user, query, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 616 in filter
clause_list.append( column.get_filter( trans, user, column_filter ) )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 400 in get_filter
return self.get_single_filter( user, column_filter )
File '/usr/local/galaxy/galaxy-dist/lib/galaxy/web/framework/helpers/grids.py', line 413 in get_single_filter
if self.key.find( '.' ) > -1:
AttributeError: 'NoneType' object has no attribute 'find'

How would I go to fix this.

Thank you,
--Ricardo Perez
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/ 

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/ 


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/