Failed runtime validation of To

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Failed runtime validation of To

Sameer Dixit
Hey all,

I've been trying to run a workflow on Galaxy, which basically attempts to establish a correlation between the Chip-Chip, Polymerase binding and Dnase Hypersensitivity data. The input would be these 3 files, I am initially performing a liftover on the Chip-Chip data to convert from hg18 to hg19 and then using the output to establish the correlation.

The following error keeps coming up
'Failed runtime validation of To (An invalid option was selected, please verify)'

Can anyone please tell me what this might mean?

This came up while attempting to run the following tool

Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/runners/__init__.py", line 121, in prepare_job job_wrapper.prepare() File "/galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/__init__.py", line 656, in prepare self.tool.handle_unvalidated_param_values( incoming, self.app ) File "/galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py", line 2343, in handle_unvalidated_param_values self.handle_unvalidated_param_values_helper( self.inputs, input_values, app ) File "/galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py", line 2382, in handle_unvalidated_param_values_helper raise LateValidationError( message ) LateValidationError

Any assistance would be highly appreciated!!

Thanks

-Sameer

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Fwd: Failed runtime validation of To

Sameer Dixit


Hey all,

I've been trying to run a workflow on Galaxy, which basically attempts to establish a correlation between the Chip-Chip, Polymerase binding and Dnase Hypersensitivity data. The input would be these 3 files, I am initially performing a liftover on the Chip-Chip data to convert from hg18 to hg19 and then using the output to establish the correlation.

The following error keeps coming up
'Failed runtime validation of To (An invalid option was selected, please verify)'

Can anyone please tell me what this might mean?

This came up while attempting to run the following tool

Traceback (most recent call last): File "/galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/runners/__init__.py", line 121, in prepare_job job_wrapper.prepare() File "/galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/__init__.py", line 656, in prepare self.tool.handle_unvalidated_param_values( incoming, self.app ) File "/galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py", line 2343, in handle_unvalidated_param_values self.handle_unvalidated_param_values_helper( self.inputs, input_values, app ) File "/galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py", line 2382, in handle_unvalidated_param_values_helper raise LateValidationError( message ) LateValidationError

Any assistance would be highly appreciated!!

Thanks

-Sameer


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Re: Fwd: Failed runtime validation of To

James Taylor
This message should be associated with a particular step in the
workflow. If you can tell us what tool it is that will help to
diagnose. The message means that a parameter that could not be checked
until the workflow ran had an invalid value.

--
James Taylor, Assistant Professor, Biology/CS, Emory University


On Mon, Jun 10, 2013 at 5:19 PM, Sameer Dixit <[hidden email]> wrote:

>
>
> Hey all,
>
> I've been trying to run a workflow on Galaxy, which basically attempts to
> establish a correlation between the Chip-Chip, Polymerase binding and Dnase
> Hypersensitivity data. The input would be these 3 files, I am initially
> performing a liftover on the Chip-Chip data to convert from hg18 to hg19 and
> then using the output to establish the correlation.
>
> The following error keeps coming up
>
> 'Failed runtime validation of To (An invalid option was selected, please
> verify)'
>
>
>
> Can anyone please tell me what this might mean?
>
> This came up while attempting to run the following tool
>
> Traceback (most recent call last):
>   File
> "/galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/runners/__init__.py", line
> 121, in prepare_job
>     job_wrapper.prepare()
>   File "/galaxy/home/g2main/galaxy_main/lib/galaxy/jobs/__init__.py", line
> 656, in prepare
>     self.tool.handle_unvalidated_param_values( incoming, self.app )
>   File "/galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py", line
> 2343, in handle_unvalidated_param_values
>     self.handle_unvalidated_param_values_helper( self.inputs, input_values,
> app )
>   File "/galaxy/home/g2main/galaxy_main/lib/galaxy/tools/__init__.py", line
> 2382, in handle_unvalidated_param_values_helper
>     raise LateValidationError( message )
> LateValidationError
>
> Any assistance would be highly appreciated!!
>
> Thanks
>
> -Sameer
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
___________________________________________________________
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