Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9016)
Replies Last Post Views
Uncaught Error When Installing Tools From Toolshed by Van Der Pol William
2
by Adrià Cereto i Massa...
Creating a tool dependency packages by Delisle Lucille
4
by Devon Ryan
Galaxy @ ISMB/ECCB/BOSC 2017: Talks, posters, dinner, BoF, and tutorial by Dave Clements-2
0
by Dave Clements-2
internal server error when creating or editing a workflow by Nadia Goué
0
by Nadia Goué
How to install Charts in command line ? by Steven Shen
4
by Steven Shen
Adding a visualization plugin to a galaxy local toolshed by Lisa Perus
2
by Lisa Perus
Bugfix - Summary Statistics Script - Python incompatibility by Previti
0
by Previti
inconsistent state set for workflow submissions [using bioblend] by Aarthi Mohan
1
by John Chilton-4
Cleaning up old exported histories by Lance Parsons
0
by Lance Parsons
problem with column options by fabien gogé
1
by Aysam Guerler
Issue with SLURM-DRMAA by Dawes, Gwen
2
by Nate Coraor (nate@bx...
tool and planemo problems by Matthias Bernt
6
by Peter Cock
Issues with "bamtools split", running jobs don't show up in history (and fail after several hours) by Previti
0
by Previti
Java memory requirements for Picard index? by Previti
2
by Previti
Shiny in Galaxy by Mohamed Kassam
6
by Hans-Rudolf Hotz
any introduce for how Mako and JavaScript work in galaxy? by Steven Shen
3
by Steven Shen
Re: Improved DRMAAJobRunner (Peter van Heusden) by Matthias Bernt
4
by Peter van Heusden
Fwd: Mismatched Files by Changsu Dong
1
by Dave Bouvier
How to use the input freebayes "input_bams" to rename output by Charles Girardot
0
by Charles Girardot
ustacks - bad interpreter by David Meltzer
8
by Björn Grüning-3
Improved DRMAAJobRunner by Matthias Bernt
1
by Peter van Heusden
running tests angainst an existing galaxy instance by Gudrun Amedick
0
by Gudrun Amedick
pyconfig.h missing by Fiona Mary Roche
0
by Fiona Mary Roche
"Best practice" for maintaining genome list in Galaxy by Peter van Heusden
0
by Peter van Heusden
Moving Shared Data Library Folders by D K
1
by Devon Ryan
DeepTools installation error by Timo Janßen
9
by Previti
conda problem with R libraries by Jochen
0
by Jochen
Python modules not found when starting with init system by Maximilian Friedersd...
4
by Abbott, James
new installation galaxy-17.05 - Uncaught error. by fernandez Edgar
9
by Aysam Guerler
Galaxy Dinner @ ISMB/ECCB/BOSC 2017 by Dave Clements-2
0
by Dave Clements-2
How to FTP files on Dockerized version of Galaxy instance running on DC/OS server? by Md. Rezaul Karim
10
by Devon Ryan
dexseq pysam error by Beginner TI
1
by Beginner TI
Mac OS X, edgeR installtion by Bongsoo Park-2
0
by Bongsoo Park-2
Singularity Container forks ? by Nikos Nikoloutsakos
6
by John Chilton-4
Admin Training Poll: Where should Galaxy Admin Training be held next? by Dave Clements-2
1
by Dave Clements-2
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