Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9000)
Replies Last Post Views
Re: Improved DRMAAJobRunner (Peter van Heusden) by Matthias Bernt
4
by Peter van Heusden
Fwd: Mismatched Files by Changsu Dong
1
by Dave Bouvier
How to use the input freebayes "input_bams" to rename output by Charles Girardot
0
by Charles Girardot
ustacks - bad interpreter by David Meltzer
8
by Björn Grüning-3
Improved DRMAAJobRunner by Matthias Bernt
1
by Peter van Heusden
running tests angainst an existing galaxy instance by Gudrun Amedick
0
by Gudrun Amedick
pyconfig.h missing by Fiona Mary Roche
0
by Fiona Mary Roche
"Best practice" for maintaining genome list in Galaxy by Peter van Heusden
0
by Peter van Heusden
Moving Shared Data Library Folders by D K
1
by Devon Ryan
DeepTools installation error by Timo Janßen
9
by Previti
conda problem with R libraries by Jochen
0
by Jochen
Python modules not found when starting with init system by Maximilian Friedersd...
4
by Abbott, James
new installation galaxy-17.05 - Uncaught error. by fernandez Edgar
9
by Aysam Guerler
Galaxy Dinner @ ISMB/ECCB/BOSC 2017 by Dave Clements-2
0
by Dave Clements-2
How to FTP files on Dockerized version of Galaxy instance running on DC/OS server? by Md. Rezaul Karim
10
by Devon Ryan
dexseq pysam error by Beginner TI
1
by Beginner TI
Mac OS X, edgeR installtion by Bongsoo Park-2
0
by Bongsoo Park-2
Singularity Container forks ? by Nikos Nikoloutsakos
6
by John Chilton-4
Admin Training Poll: Where should Galaxy Admin Training be held next? by Dave Clements-2
1
by Dave Clements-2
AD Intergration by John Chen
11
by Chen, John (IT)
drmaa resubmission by Matthias Bernt
2
by Matthias Bernt
drmaa job status by Matthias Bernt
3
by Matthias Bernt
Galaxy slurm error by evan clark
3
by Nate Coraor (nate@bx...
Galaxy Job Error by evan clark
3
by Marius van den Beek
Release of Galaxy 17.05 by Jennifer Hillman-Jac...
0
by Jennifer Hillman-Jac...
Paste/Fetch data, indicate filename before download data (default = Pasted Entry) by SAPET, Frederic
2
by SAPET, Frederic
composite datatypes: uploading and optional files by Peter van Heusden
1
by Björn Grüning-3
galaxy & DFARS by Eric Rasche-3
0
by Eric Rasche-3
bwa_mem and "-t" option by David Kovalic-3
5
by David Kovalic-3
Large Number of jobs Failing following error by Evan
0
by Evan
Issue with GATK2 on Galaxy Repository. by OLABODE OLUWASEUN AJ...
2
by Nicola Soranzo-2
jupyter notebook / nginx / ssl by Cristel Thomas
0
by Cristel Thomas
Issue with job_name, UnicodeDecodeError in drmaa by Raj Ayyampalayam
7
by Peter Cock
protein ligand docking by Matthias Bernt
0
by Matthias Bernt
python subprocess OSError when running bwa-mem by Georgios Nikolis
3
by Hans-Rudolf Hotz
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