Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Galaxy job scheduler slows down, when too many jobs are in the queue by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
Picard installation dependency issues by Scott Szakonyi
6
by Scott Szakonyi
December 2015 Galactic News by Dave Clements-2
0
by Dave Clements-2
Aberrant data allocation and SNP mapping problem by Felix Mayr
3
by Dannon Baker-2
Question about contributing a Visualization plugin to Galaxy by Greg Von Kuster
6
by Greg Von Kuster
Last day to submit your abstract! BIB-SCB: III Bioinformatics and Computational Biology by Dave Clements-2
1
by Dave Clements-2
Error installing tools from toolshed by Scott Szakonyi
8
by Scott Szakonyi
IUC Contribution Fest - Metagenomics Tools and Workflows by Björn Grüning-3
0
by Björn Grüning-3
Bx-python and numpy eggs by Jose Juan Almagro Ar...
7
by Björn Grüning-3
Potential Hackathon proposal: RADSeq by Tiago Antao
28
by Tiago Antao
RAD-Seq Hackathon: Doodle pool by Tiago Antao
1
by Tiago Antao
tool data_column param issue under workflow mode by FGiacomoni INRA
3
by Aysam Guerler
Unable to up Planemo against latest dev by Christian Brenninkme...
10
by Christian Brenninkme...
Clustered heatmap bug? by Tiago Antao
0
by Tiago Antao
Planemo 0.20.0 and xunit by Tiago Antao
6
by John Chilton-4
workflow API: step_order vs step_id in bioblend by Jorrit Boekel
3
by John Chilton-4
ProFTPD with SQLite by Mic
4
by Mic
rgFastQC.py error - cannot find executable /fastqc by Mic
5
by Mic
API key change manually by Mic
3
by Mic
Cloudman vs StarCluster by ryang
1
by Enis Afgan-3
Tool code for symlinking a data collection from input to output? by Dooley, Damion
6
by Aaron Petkau-2
Dataset tags lost when copying or sharing history by Brian Claywell-2
1
by Björn Grüning-3
galaxy folder tree permissions by lejeczek
4
by David Trudgian
list collection output - format set from input by Alexander Vowinkel
6
by John Chilton-4
developer details by Mic
2
by Mic
Bug when reading in tab seperated files by Christian Brenninkme...
1
by Peter Cock
Tmhmm and signal P by Olivier CLAUDE
17
by Peter Cock
Working with SLURM (same partition as cmd line)? by Raymond Wan
0
by Raymond Wan
Tool request: Integration von SecretomeP v1.0 in Galaxy by Florian Sigloch
0
by Florian Sigloch
Galaxy Startup Failing by Keith Suderman
6
by Will Holtz
Remote Contribution Fest - Metagenomics Tools and Workflows 30th December + 1st November by Björn Grüning-3
0
by Björn Grüning-3
feature request by ryang
4
by ryang
Set Galaxy as server by Durdevic, Marija
1
by Dannon Baker-2
email activation setting failed by Jun Fan
1
by Dannon Baker-2
login problem (redirection to the login page) by Floreline TOUCHARD
8
by Dannon Baker-2
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