Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Tools that make datasets by Steve Cassidy
8
by Steve Cassidy
recurring issues with revisions of packages from toolshed by Sarah DIEHL-3
9
by Sarah DIEHL-3
blast2html by Juan Carlos
4
by Juan Carlos
Galaxy Slurm job_conf.xml by Simon Gladman-2
2
by Sven E. Templer
Plot-bamstats by Jose Juan Almagro Ar...
2
by Björn Grüning-3
Fwd: Seeking Help with Galaxy by Anton Nekrutenko-2
0
by Anton Nekrutenko-2
CloudMan launch error by Aaron Darling
2
by Aaron Darling
Galaxy Interactive Environment devs by Eric Rasche-2
8
by Eric Rasche-2
CORS requests to public Galaxy server by Marco Ocana
1
by Carl Eberhard
QIIME tools for Galaxy (WIP, call for collaborators) by Lance Parsons
9
by Björn Grüning-3
galaxy / sartools / bug by Sabrina Legoueix Rod...
0
by Sabrina Legoueix Rod...
tomorrow's GalaxyAdmins Online Meetup: Galaxy at Analome with David Kovalic by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
Advice on Galaxy administration by Raymond Wan
14
by Makis Ladoukakis
MS Active Directory Authentication by McCully, Dwayne (NIH...
3
by Nicola Soranzo-2
External User Authenticaion by ryang
13
by ryang
Installing Cairo into Gakaxy by Christian Brenninkme...
24
by Christian Brenninkme...
updated eggs needed for OS X El Capitan compatibility by Wolfgang Maier
1
by Dannon Baker-2
GCC2016 Training Day Topic Nominations are now open by Dave Clements-2
1
by Dave Clements-2
Get the working directory within the ncbi_blastp_wrapper.xml file by Ryan Johnson
1
by John Chilton-4
Workflow 'Input Dataset' Ressolution Issue by marcoalbuquerque
5
by John Chilton-4
Question about using dynamic options and refresh_on_change for rendering 2 associated select lists by Greg Von Kuster
6
by Björn Grüning-3
Puzzling error in program using Bioblend by mark fernandes (IFR)
2
by mark fernandes (IFR)
package_picard_1_136 installation error by Sven E. Templer
0
by Sven E. Templer
User API keys with External (LDAP) authentication disabled? by ryang
3
by ryang
Sharing galaxy on CentOS7/Slurm/HPC/Proftp/Postgres/Apache/LDAP setup configurations by Sven E. Templer
2
by Sven E. Templer
Some issues with job submission to pulsar by Raj Ayyampalayam
2
by Raj Ayyampalayam
Problems with Galaxy cluster using grid engine by Richard Polich
2
by Richard Polich
Connection to PBS server XXX for state check failed - is it possible to get any help? by Zuzanna K. Filutowsk...
0
by Zuzanna K. Filutowsk...
External Pipeline Cleanup by ryang
0
by ryang
httpd-ldap vs. ftpd-sql (or: ldap password hash incorrect?) by Sven E. Templer
0
by Sven E. Templer
Creating R galaxy wrapper where a function checks file extension by Martin Vickers [mjv0...
4
by Martin Vickers [mjv0...
Documentation of Galaxy API metadata objects by Clare Sloggett
3
by Carl Eberhard
October 2015 News of the Galaxy by Dave Clements-2
0
by Dave Clements-2
Picard sortSam python error inside its Java app? by Dooley, Damion
0
by Dooley, Damion
Query in publishing the tool by Gaurav Kumar
0
by Gaurav Kumar
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