Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Question about using dynamic options and refresh_on_change for rendering 2 associated select lists by Greg Von Kuster
7
by Greg Von Kuster
set_user_disk_usage.py as a cron job? by Jose Juan Almagro Ar...
0
by Jose Juan Almagro Ar...
Re: validator type="empty_field" is not working within repeat tags by anmoljh
1
by John Chilton-4
Adding data libraries from filesystem path creating duplicates by Martin Vickers [mjv0...
3
by John Chilton-4
_JAVA_OPTIONS config parameter in job_conf.xml.sample_advanced by Dooley, Damion
0
by Dooley, Damion
Galaxy on a Cluster -- Active Directory LDAP configuration by Carlos Lijeron
5
by Nicola Soranzo-2
Running Galaxy on a cluster with SLURM ? by Carlos Lijeron
1
by Sven E. Templer
Current directory in the galaxy job file script by Ping
0
by Ping
uWSGI --daemonize option should be replaced with --daemonize2 by Federico Zambelli-2
0
by Federico Zambelli-2
parse history file/uploaded file with dynamic_options script by Linda Bakker
2
by Linda Bakker
Need urgent help: ItemOwnershipException: History is not owned by user by Zuzanna K. Filutowsk...
11
by Zuzanna K. Filutowsk...
Time Out by Daniel Siqueira de O...
0
by Daniel Siqueira de O...
Problem with load balancing. by Zuzanna K. Filutowsk...
1
by Zuzanna K. Filutowsk...
Error when Installing package_galaxy_utils_1_0 by Leslie Herrera
2
by Sven E. Templer
need help badly by fernandez Edgar
7
by Keith Suderman
Galaxy Tools and Collections Remote Hackathon (Thursday and Friday) by John Chilton-4
1
by Björn Grüning-3
Picard sam2fastq tool can output file including both single and paired reads? by Dooley, Damion
0
by Dooley, Damion
Mothur count.seqs by Shane Sturrock
0
by Shane Sturrock
simplifying Galaxy interface to the max (zen-like) by Piotr Grabowski
3
by Piotr Grabowski
FastQC galaxy issue by Hakeem Almabrazi-2
5
by Hakeem Almabrazi-2
GCC2017 Needs a Host! by Dave Clements-2
0
by Dave Clements-2
Removing LWR Support from Galaxy by John Chilton-4
0
by John Chilton-4
Subtleties of <version_command> and escaping dollar signs by Peter Cock
3
by John Chilton-4
Opening Galaxy with a specified History Name by ROBERT BROWN
3
by John Chilton-4
Galaxy configuration by Clinton Chee
5
by Clinton Chee
Process stuck in unix 'T' State by Calvin Morrison
1
by John Chilton-4
Cloudman - using different worker instance types by David Kovalic
2
by David Kovalic
Adding categories to Main by Keith Suderman
9
by Keith Suderman
custom tool - accessing user's data in bash script by Piotr Grabowski
1
by Björn Grüning-3
LDAP and valid username by Edouard Hirchaud
0
by Edouard Hirchaud
Tool with multiple outputs. by Léo Biscassi
4
by Léo Biscassi
Fatal Error while uploading a File with special Characters by M_Enders
4
by M_Enders
Configuring Apache server with uwsgi by Makis Ladoukakis
0
by Makis Ladoukakis
galaxy.ini tool_dependency_dir change by Dooley, Damion
4
by Will Holtz
BUG: Collections and History export by Alexander Vowinkel
1
by John Chilton-4
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