Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Fwd: Re: Change from Bitbucket to git by Jochen
0
by Jochen
Change from Bitbucket to git by Jochen
3
by Jelle Scholtalbers
Possible bug on "Create a collection of paired datasets" by Ata Roudgar
2
by Ata Roudgar
Troubleshooting by Lionel Mavoungou
2
by Lionel Mavoungou
Tophat run stops by McCully, Dwayne (NIH...
0
by McCully, Dwayne (NIH...
Error sorting or uploading Bam File by juliech
5
by juliech
./run.sh segfault by Martin Vickers [mjv0...
4
by Martin Vickers [mjv0...
yaml import problem on startup by richjp
4
by Marius van den Beek
Password-Reset by M_Enders
0
by M_Enders
unsubscribe by ricky_pz2
0
by ricky_pz2
Re: CloudMan auto-scaling - Use spot instance for worker node? by Alexander Vowinkel
1
by Enis Afgan-3
Download data by data manager with non generic ftp-proxy by Tobias Zimmermann
1
by John Chilton-4
Data Libraries: Unable to Link to Files When Paths Contain Spaces by Joe Greer
1
by John Chilton-4
Ipython behind apache proxy, firefox CORS error by Jelle Scholtalbers
2
by Eric Rasche-2
User is not allowed to view history by Lina L Faller
5
by Carl Eberhard
cloudman galaxy - too large volume by Alexander Vowinkel
3
by Enis Afgan-3
collection problem by Alexander Vowinkel
1
by Alexander Vowinkel
cloudlaunch not working by Alexander Vowinkel
1
by Alexander Vowinkel
Nob able to upload even 25MB of file for running metaphlan on public Galaxy sever. by Prathik KV
1
by Nate Coraor (nate@bx...
"Variant Annotator" reference genome by sarah Maman
2
by Gildas Le Corguillé
Galaxy server build by Benjamin Datko
1
by Langhorst, Brad
galaxy.ini by Bryan Hepworth
4
by Björn Grüning-3
Samtools 1.1 Dependency by Hans Vasquez-Gross
1
by Dave Bouvier
problem with npm install for galaxy ipython by Christian Brenninkme...
1
by Björn Grüning-3
problem with view of list collection in history view by Alexander Vowinkel
2
by John Chilton-4
Change Password by Mariel Voutounou
0
by Mariel Voutounou
Error in Reset Password User Notification by M_Enders
0
by M_Enders
Cosmetic Makeblastdb error promulgated through wrapper by Dooley, Damion
5
by Dooley, Damion
Problem retrieving password by Jonathan Baker
0
by Jonathan Baker
Parallelism using metadata by marcoalbuquerque
4
by Peter Cock
Fix for missing included files from history export and import by Vimalkumar Velayudha...
0
by Vimalkumar Velayudha...
Problem finding depency for none toolshed tools by Christian Brenninkme...
1
by Christian Brenninkme...
cloudman launch by Alexander Vowinkel
4
by Enis Afgan-3
cloudman persist filesystem error by Alexander Vowinkel
2
by Alexander Vowinkel
running tophat2 on local Galaxy - can't find bowtie2 by HARDING Simon
0
by HARDING Simon
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