Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Galaxy Torque by Benjamin Datko
3
by John Chilton-4
I need some advice on what type of Galaxy server to implement by Shane Kelly
4
by Shane Kelly-2
Cannot import or download workflow by jeltje
0
by jeltje
Re: problems installing htseq in local Galaxy by Lance Parsons
0
by Lance Parsons
Reasons to choose psql over mysql or not by Eric Kuyt
3
by Kandalaft, Iyad
bwa mem index builder error by Stef van Lieshout
0
by Stef van Lieshout
ERROR in Galaxy by Stephanie Beck Roth
1
by Dannon Baker-2
Workflow editor stuck on loading workflow by ryang
6
by ryang
Switching history doesn't work with prefix by Ping
6
by Dannon Baker-2
Tool Versions not displaying in a predictable way in the tool menu by Lance Parsons
0
by Lance Parsons
"Failure when preparing job" on blastp by Peter van Heusden
6
by Peter Cock
Object-Store, setting filetypes crashes Galaxy by Björn Grüning-3
7
by Peter Cock
Connection reset by peer by COUNTOURIS Hector
1
by John Chilton-4
Fwd: Re: Change from Bitbucket to git by Jochen
0
by Jochen
Change from Bitbucket to git by Jochen
3
by Jelle Scholtalbers
Possible bug on "Create a collection of paired datasets" by Ata Roudgar
2
by Ata Roudgar
Troubleshooting by Lionel Mavoungou
2
by Lionel Mavoungou
Tophat run stops by McCully, Dwayne (NIH...
0
by McCully, Dwayne (NIH...
Error sorting or uploading Bam File by juliech
5
by juliech
./run.sh segfault by Martin Vickers [mjv0...
4
by Martin Vickers [mjv0...
yaml import problem on startup by richjp
4
by Marius van den Beek
Password-Reset by M_Enders
0
by M_Enders
unsubscribe by ricky_pz2
0
by ricky_pz2
Re: CloudMan auto-scaling - Use spot instance for worker node? by Alexander Vowinkel
1
by Enis Afgan-3
Download data by data manager with non generic ftp-proxy by Tobias Zimmermann
1
by John Chilton-4
Data Libraries: Unable to Link to Files When Paths Contain Spaces by Joe Greer
1
by John Chilton-4
Ipython behind apache proxy, firefox CORS error by Jelle Scholtalbers
2
by Eric Rasche-2
User is not allowed to view history by Lina L Faller
5
by Carl Eberhard
cloudman galaxy - too large volume by Alexander Vowinkel
3
by Enis Afgan-3
collection problem by Alexander Vowinkel
1
by Alexander Vowinkel
cloudlaunch not working by Alexander Vowinkel
1
by Alexander Vowinkel
Nob able to upload even 25MB of file for running metaphlan on public Galaxy sever. by Prathik KV
1
by Nate Coraor (nate@bx...
"Variant Annotator" reference genome by sarah Maman
2
by Gildas Le Corguillé
Galaxy server build by Benjamin Datko
1
by Langhorst, Brad
galaxy.ini by Bryan Hepworth
4
by Björn Grüning-3
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