Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Not seeing reference genome - Bowtie2 by McCully, Dwayne (NIH...
0
by McCully, Dwayne (NIH...
output filter bugs by Alexander Vowinkel
2
by Alexander Vowinkel
Job still waiting - Command Line None - SGE by Gildas Le Corguillé
2
by Gildas Le Corguillé
planemo shed_update - error by Alexander Vowinkel
6
by Alexander Vowinkel
Galaxy API to upload files to data library by ryang
7
by ryang
LDAP and new history creation by Erwan Delage
2
by Erwan Delage
Download of hg19 genome by data manager fails by Tobias Zimmermann
0
by Tobias Zimmermann
Set build when discovering output in collection by Alexander Vowinkel
2
by Alexander Vowinkel
input dataset(s) and collections by ryang
2
by ryang
Data Collections by Alexander Vowinkel
3
by John Chilton-4
Using API to identify all datasets that were part of a workflow? by Ben Bimber
2
by Ben Bimber
bowtie dataset pair input by ryang
2
by John Chilton-4
Using 'display_servers' even if not REMOTE_USER a good idea? by David Trudgian
0
by David Trudgian
cloudman error somewhere by Alexander Vowinkel
4
by Enis Afgan-3
Cloudman cluster not starting workers by Nicholas Dickens
6
by Enis Afgan-3
Galaxy admin access by Davenport, Aneisha
10
by Davenport, Aneisha
Strange repository dependency behavior with toolshed-installed naive_variant_caller by Brian Claywell-2
5
by Brian Claywell-2
cheetah chaet sheet by Alexander Vowinkel
1
by Martin Čech
Custom Tool Dev Questions by ryang
2
by ryang
BAM datatype - bam & bai by Alexander Vowinkel
3
by Alexander Vowinkel
macro tag naming conventions by Alexander Vowinkel
1
by Peter Cock
package_bowtie_2_2_4 Executable Permissions - can't run bowtie as non-galaxy user by David Trudgian
2
by Nicola Soranzo-2
Bug in commit 38679a0 by ryang
1
by John Chilton-4
table_recalibration cannot be installed through tool_shed by Jingchao
0
by Jingchao
Adding packages for bedtools and ucsc-utils for Trackster? by Peter van Heusden
5
by Eric Rasche-2
GalaxyAdmins Online Meetup this Thursday: Peter Briggs on Galactic Engineering at Manchester by Dave Clements-2
4
by Daniel Blankenberg
functional tests / database lock by ryang
9
by ryang
Bug in galaxy-dist/latest_15.05 for "Share history with user" function by Peter Briggs
6
by Peter Briggs
web interface says installation OK but log file says ERROR? by Pablo Escobar
0
by Pablo Escobar
How to hide history and tool panel by Makis Ladoukakis
0
by Makis Ladoukakis
Repository installation error - missing by Alexander Vowinkel
1
by Alexander Vowinkel
config files in cloudman by Alexander Vowinkel
1
by Enis Afgan-3
minor visual bug found when using Firefox by ryang
1
by John Chilton-4
keep job output and scripts on failed tests by ryang
4
by John Chilton-4
Announcement: Disabling Tool Shed Testing Display by John Chilton-4
0
by John Chilton-4
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