Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9232)
Replies Last Post Views
Sample Tracking Feature in Galaxy by Hakeem Almabrazi-2
3
by Hakeem Almabrazi-2
passing the name attribute from the DB to a sniffer by Josh Woodring
1
by Björn Grüning-3
install_tool_shed_repositories.py returns HTTP Error 400: Bad Request by Mic
1
by Björn Grüning-3
collection in workflow fail by Alexander Vowinkel
2
by John Chilton-4
Call for Tool Shed Admins by Martin Čech
2
by Eric Rasche-2
migrated_tools_conf.xml propose by Mic
1
by John Chilton-4
configuring job runner slurm on cloudman by Alexander Vowinkel
2
by Alexander Vowinkel
August 2015 Galactic News by Dave Clements-2
0
by Dave Clements-2
Galaxy Resource by CHELSEA JU
1
by David Trudgian
if you consider switching from MySQL to PostgreSQL.... by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
Bug on current history when using prefix in galaxy input file by Ata Roudgar
3
by Dannon Baker-2
Problems installing pbs_python from scramble. by Zuzanna K. Filutowsk...
3
by Zuzanna K. Filutowsk...
Setting up Galaxy without e-mail by Raymond Wan
2
by Raymond Wan
tool with multiple undefined output datasets by Sabrina rodriguez
1
by John Chilton-4
Galaxy Torque by Benjamin Datko
3
by John Chilton-4
I need some advice on what type of Galaxy server to implement by Shane Kelly
4
by Shane Kelly-2
Cannot import or download workflow by jeltje
0
by jeltje
Re: problems installing htseq in local Galaxy by Lance Parsons
0
by Lance Parsons
Reasons to choose psql over mysql or not by Eric Kuyt
3
by Kandalaft, Iyad
bwa mem index builder error by Stef van Lieshout
0
by Stef van Lieshout
ERROR in Galaxy by Stephanie Beck Roth
1
by Dannon Baker-2
Workflow editor stuck on loading workflow by ryang
6
by ryang
Switching history doesn't work with prefix by Ping
6
by Dannon Baker-2
Tool Versions not displaying in a predictable way in the tool menu by Lance Parsons
0
by Lance Parsons
"Failure when preparing job" on blastp by Peter van Heusden
6
by Peter Cock
Object-Store, setting filetypes crashes Galaxy by Björn Grüning-3
7
by Peter Cock
Connection reset by peer by COUNTOURIS Hector
1
by John Chilton-4
Fwd: Re: Change from Bitbucket to git by Jochen
0
by Jochen
Change from Bitbucket to git by Jochen
3
by Jelle Scholtalbers
Possible bug on "Create a collection of paired datasets" by Ata Roudgar
2
by Ata Roudgar
Troubleshooting by Lionel Mavoungou
2
by Lionel Mavoungou
Tophat run stops by McCully, Dwayne (NIH...
0
by McCully, Dwayne (NIH...
Error sorting or uploading Bam File by juliech
5
by juliech
./run.sh segfault by Martin Vickers [mjv0...
4
by Martin Vickers [mjv0...
yaml import problem on startup by richjp
4
by Marius van den Beek
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