Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Bug in commit 38679a0 by ryang
1
by John Chilton-4
table_recalibration cannot be installed through tool_shed by Jingchao
0
by Jingchao
Adding packages for bedtools and ucsc-utils for Trackster? by Peter van Heusden
5
by Eric Rasche-2
GalaxyAdmins Online Meetup this Thursday: Peter Briggs on Galactic Engineering at Manchester by Dave Clements-2
4
by Daniel Blankenberg
functional tests / database lock by ryang
9
by ryang
Bug in galaxy-dist/latest_15.05 for "Share history with user" function by Peter Briggs
6
by Peter Briggs
web interface says installation OK but log file says ERROR? by Pablo Escobar
0
by Pablo Escobar
How to hide history and tool panel by Makis Ladoukakis
0
by Makis Ladoukakis
Repository installation error - missing by Alexander Vowinkel
1
by Alexander Vowinkel
config files in cloudman by Alexander Vowinkel
1
by Enis Afgan-3
minor visual bug found when using Firefox by ryang
1
by John Chilton-4
keep job output and scripts on failed tests by ryang
4
by John Chilton-4
Announcement: Disabling Tool Shed Testing Display by John Chilton-4
0
by John Chilton-4
docker-galaxy-stable tools fail by Evan Bollig PhD
3
by Björn Grüning-3
picard_MarkDuplicatesWithMateCigar functional test failure by ryang
2
by ryang
Functional test for BAM output by Marius van den Beek
5
by Marius van den Beek
BioBlend Dependency Issues by Medini Annavajhala
2
by Medini Annavajhala
delete many galaxy tools by Alexander Vowinkel
1
by Björn Grüning-3
Feature Request: Ability to specify a directory to read xml files for tool configuration by ryang
3
by ryang
Couldn't download file by Jingchao
0
by Jingchao
Data Manager - BWA-MEM index by Alexander Vowinkel
1
by Enis Afgan-3
job queue problem with cloud man by Alexander Vowinkel
2
by Enis Afgan-3
Bismark doesn't end and blocks the server by C. Ch.
3
by Björn Grüning-3
Trackster bug by C. Ch.
6
by C. Ch.
install packagess without toolshed by Alexander Vowinkel
4
by Björn Grüning-3
filtering html tables in a history item by Mark
1
by Carl Eberhard
errors and questions with run_tests.sh and install_and_test_tool_shed_repositories.sh by Loraine Guéguen
4
by John Chilton-4
Problem with set_user_disk_usage.py script by Shane Sturrock
2
by Shane Sturrock
Re: galaxy-dev Digest, Vol 108, Issue 8 by Marc
0
by Marc
Multi-level datatype conversions by David Kelly
1
by Keith Suderman
error return- PICRUSt by Rebecca Prescott
1
by James Taylor-4
How to access the api by jQuery ajax? by Yanbo Ye
2
by Yanbo Ye
Re: Sending tool output to input parameters of downstream tool(s) by Alexander Vowinkel
0
by Alexander Vowinkel
Problem in Json datatype? by Keith Suderman
2
by John Chilton-4
Functional Test Failures with 15.05 by ryang
1
by Martin Čech
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