Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
docker-galaxy-stable tools fail by Evan Bollig PhD
3
by Björn Grüning-3
picard_MarkDuplicatesWithMateCigar functional test failure by ryang
2
by ryang
Functional test for BAM output by Marius van den Beek
5
by Marius van den Beek
BioBlend Dependency Issues by Medini Annavajhala
2
by Medini Annavajhala
delete many galaxy tools by Alexander Vowinkel
1
by Björn Grüning-3
Feature Request: Ability to specify a directory to read xml files for tool configuration by ryang
3
by ryang
Couldn't download file by Jingchao
0
by Jingchao
Data Manager - BWA-MEM index by Alexander Vowinkel
1
by Enis Afgan-3
job queue problem with cloud man by Alexander Vowinkel
2
by Enis Afgan-3
Bismark doesn't end and blocks the server by C. Ch.
3
by Björn Grüning-3
Trackster bug by C. Ch.
6
by C. Ch.
install packagess without toolshed by Alexander Vowinkel
4
by Björn Grüning-3
filtering html tables in a history item by Mark
1
by Carl Eberhard
errors and questions with run_tests.sh and install_and_test_tool_shed_repositories.sh by Loraine Guéguen
4
by John Chilton-4
Problem with set_user_disk_usage.py script by Shane Sturrock
2
by Shane Sturrock
Re: galaxy-dev Digest, Vol 108, Issue 8 by Marc
0
by Marc
Multi-level datatype conversions by David Kelly
1
by Keith Suderman
error return- PICRUSt by Rebecca Prescott
1
by James Taylor-4
How to access the api by jQuery ajax? by Yanbo Ye
2
by Yanbo Ye
Re: Sending tool output to input parameters of downstream tool(s) by Alexander Vowinkel
0
by Alexander Vowinkel
Problem in Json datatype? by Keith Suderman
2
by John Chilton-4
Functional Test Failures with 15.05 by ryang
1
by Martin Čech
API access from Tool script by Raffaele Montella
0
by Raffaele Montella
LEfSe on local Galaxy instance by Romain Maleysson
0
by Romain Maleysson
Migrating Galaxy 14.02 to 15.05 : error with tool migration by Jean-Philippe Villem...
0
by Jean-Philippe Villem...
Problem sharing histories by richjp
2
by John Chilton-4
unable to install from toolshed. bounced e-mail by Leontovich, Alexey A...
1
by Dave Bouvier
Error bootstrapping a toolshed by Marius van den Beek
2
by Marius van den Beek
unable to install tools from the toolshed by Leontovich, Alexey A...
0
by Leontovich, Alexey A...
June 2015 Galaxy New by Dave Clements-2
0
by Dave Clements-2
galaxy upgrade by Shrum, Donald C
1
by Dannon Baker-2
devteam/fastqc (current) vs iuc/fastqc (obsolete?) by Peter Cock
0
by Peter Cock
Can't set value of conditional boolean parameter in tool tests by Peter Briggs
5
by Peter Briggs
Tool installation problems within main Tool Shed test framework? by Peter Cock
0
by Peter Cock
Data visualization by Keith Suderman
3
by Keith Suderman
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