Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
API access from Tool script by Raffaele Montella
0
by Raffaele Montella
LEfSe on local Galaxy instance by Romain Maleysson
0
by Romain Maleysson
Migrating Galaxy 14.02 to 15.05 : error with tool migration by Jean-Philippe Villem...
0
by Jean-Philippe Villem...
Problem sharing histories by richjp
2
by John Chilton-4
unable to install from toolshed. bounced e-mail by Leontovich, Alexey A...
1
by Dave Bouvier
Error bootstrapping a toolshed by Marius van den Beek
2
by Marius van den Beek
unable to install tools from the toolshed by Leontovich, Alexey A...
0
by Leontovich, Alexey A...
June 2015 Galaxy New by Dave Clements-2
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by Dave Clements-2
galaxy upgrade by Shrum, Donald C
1
by Dannon Baker-2
devteam/fastqc (current) vs iuc/fastqc (obsolete?) by Peter Cock
0
by Peter Cock
Can't set value of conditional boolean parameter in tool tests by Peter Briggs
5
by Peter Briggs
Tool installation problems within main Tool Shed test framework? by Peter Cock
0
by Peter Cock
Data visualization by Keith Suderman
3
by Keith Suderman
Data Visualization by Keith Suderman-2
0
by Keith Suderman-2
Re: galaxy-dev Digest, Vol 107, Issue 22 by Gurp, Thomas van
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by Gurp, Thomas van
error executing test by Roberto Alonso CIPF
2
by Roberto Alonso CIPF
Web processes and SSL by Scott Szakonyi
1
by John Chilton-4
Re: samtools index tool by Eleanor Morgan
1
by Peter Cock
connecting composite data elements to a display application by Brian Haas
6
by Brian Haas
Bug with boolean param (with truevalue) by Christian Brenninkme...
0
by Christian Brenninkme...
any working example of auth_conf.xml validating against openldap? by Pablo Escobar
2
by Nicola Soranzo-2
Adding BioPython as a dependency to Galaxy by Eric Rasche-2
1
by Peter Cock
tophat2 failing to execute by Eleanor Morgan
3
by Martin Čech
simple example of composite data types by Brian Haas
14
by Brian Haas
How to get the dynamically loaded select menus to work in workflows? by Joanna Parmley
1
by John Chilton-4
custom builds by Shrum, Donald C
1
by John Chilton-4
ldap module not present by Will Holtz
1
by John Chilton-4
Can a tool retrieve a user's API KEY? by ryang
1
by John Chilton-4
alternative solution to logout ldap users by Pablo Escobar
0
by Pablo Escobar
difficulty creating composite data type by Brian Haas
0
by Brian Haas
missing auth_conf.xml.sample by Tony Kusalik
3
by Nate Coraor (nate@bx...
Issue with latest run of automated tool shed testing? by Christy Shafer
0
by Christy Shafer
May 2015 Galaxy Release (v 15.05) by Jennifer Hillman-Jac...
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by Jennifer Hillman-Jac...
user data in home folder and SGE integration by Pablo Escobar
1
by John Chilton-4
Installing DAVID Functional Annotation 1.0.0 in local instance by Gabriele Zoppoli
0
by Gabriele Zoppoli
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