Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9006)
Replies Last Post Views
Large Number of jobs Failing following error by Evan Clark-2
0
by Evan Clark-2
Issue with GATK2 on Galaxy Repository. by OLABODE OLUWASEUN AJ...
2
by Nicola Soranzo-2
jupyter notebook / nginx / ssl by Cristel Thomas
0
by Cristel Thomas
Issue with job_name, UnicodeDecodeError in drmaa by Raj Ayyampalayam
7
by Peter Cock
protein ligand docking by Matthias Bernt
0
by Matthias Bernt
python subprocess OSError when running bwa-mem by Georgios Nikolis
3
by Hans-Rudolf Hotz
Decrease Galaxy polling of slurm? by Philip Blood
2
by Philip Blood
vcftools - errors running vcf-merge by richjp
0
by richjp
cluster access by Matthias Bernt
4
by Matthias Bernt
OpenBabel Requirements by Matthias Bernt
6
by Matthias Bernt
Which ID ('id', 'workflow_id', and 'dataset_id') should be used? by Aarthi Mohan
2
by Aarthi Mohan
Problem with dataset not being cleaned. by C. Ch.
0
by C. Ch.
Project Publication Reference Tracking Tool -- are you interested in? by Krzysztof Kutt
2
by Dave Clements-2
location of history id by Aarthi Mohan-2
1
by John Chilton-4
Galaxy Start Up Error - Double Requirements, Tempita by Yip, Miu ki
1
by John Chilton-4
Pulsar - running as real DRMAA user problems by richjp
6
by richjp
Fwd: Galaxy Error while Using PBS by Jennifer Hillman-Jac...
0
by Jennifer Hillman-Jac...
Unable to run workflow from command-line by Aarthi Mohan
0
by Aarthi Mohan
python environment on SGE cluster nodes by David Simpson
3
by David Simpson
creating roles through the API by Lemley, Rob
0
by Lemley, Rob
strange submit script by Nikolaos Tur
0
by Nikolaos Tur
unable to install tools by Briand, Sheldon (NRC...
3
by Briand, Sheldon (NRC...
keeping the original file name from the FTP pop-up by vazovn
0
by vazovn
uWSGI dataset request error by Dawes, Gwen
0
by Dawes, Gwen
Combine different resolvers for one tool by Ignacio EGUINOA
0
by Ignacio EGUINOA
Running jobs as real user and extra_file_path by Louise-Amélie Schmit...
3
by Peter Cock
Environmental Variable in <version_command> by D K
0
by D K
Additional Information about users in the API by Milen Kouylekov
4
by Martin Čech
Galaxy User IDs and Group IDs by Lemley, Rob
1
by Martin Čech
conda path problem by Matthias Bernt
0
by Matthias Bernt
conda installation fails by Matthias Bernt
3
by Matthias Bernt
atlas version 3.10.2 installation error by Matthias Bernt
8
by Peter Cock
Testing updated NCBI BLAST+ wrappers for version 2.5.0 by Peter Cock
1
by Peter Cock
SSL certificate errors by Matthias Bernt
2
by Matthias Bernt
GCC2107 Update: Oral presentation abstracts due 15 April by Dave Clements-2
1
by Peter Cock
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