Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Galaxy on CentOS? by Carlos Lijeron
8
by James Taylor-4
Re. find UUID of current history in tool XML wrapper? (Ben Bimber) by Dooley, Damion
0
by Dooley, Damion
Problem adding system build for visualization by fourie.joubert@up.ac...
0
by fourie.joubert@up.ac...
Job submission failed by Vipin TS
8
by Vipin TS
use of copied history while original user account deleled (and purged) by Olivia Doppelt
1
by John Chilton-4
Possible to pass hostName to a tool? by Ben Bimber
1
by John Chilton-4
Fwd: Failure to set attributes_type metadata for interval files / error in gff_filter_by_attribute tool by Marius van den Beek
2
by Dannon Baker-2
May 2015 Galactic News (and 2 GCC2015 deadlines today) by Dave Clements-2
0
by Dave Clements-2
Configuring galaxy to run on LSF by Asma Riyaz
1
by Ping
Migrating user account from galaxy specific to LDAP by Teshome Dagne Muluge...
5
by Eric Rasche-2
Galaxy for Natural Language Processing by Keith Suderman
9
by Keith Suderman
new tool works correctly but galaxy thinks it failed by ryang
10
by Linda Bakker
<code> tagset in tools by Simon Gladman-2
3
by Simon Gladman-2
Data Libraries by ryang
4
by ryang
Authenticating Against Galaxy from within a tool? by Ben Bimber
3
by Ben Bimber
optional tool arguments by ryang
3
by ryang
Question about automated cleanup scripts by Van Der Pol William
0
by Van Der Pol William
PR 149 by Roberto Alonso CIPF
3
by Peter Cock
UnmappedClassError: Class 'kombu.transport.sqlalchemy.Message' is not mapped by Peter Cock
3
by Dannon Baker-2
follow up question regarding the 'toolform-upgrade' by Hans-Rudolf Hotz
1
by Björn Grüning-3
History panel error by Jose Juan Almagro Ar...
8
by Dannon Baker-2
SSL/LDAP configuration for CloudMan/Galaxy by David Kovalic
3
by David Kovalic
planemo questions by Christian Brenninkme...
1
by Peter Cock
splitting bams bai by Roberto Alonso CIPF
0
by Roberto Alonso CIPF
GCC2015 Registration is Open! by Dave Clements-2
0
by Dave Clements-2
error in Galaxy (lefse) by Borruso Luigimaria
1
by Jennifer Hillman-Jac...
Announcement: Galaxy Docker Image 15.03 by Björn Grüning-3
4
by Michael Crusoe
InvalidRequestError: kombu.transport.sqlalchemy.Queue by Asma Riyaz
1
by Dannon Baker-2
README.rst missing on Tool Shed display? by Peter Cock
0
by Peter Cock
question about splitting bams by Roberto Alonso CIPF
3
by Roberto Alonso CIPF
Shared Data Library issues with permissions by cganote@iu.edu
1
by Martin Čech
Serving a galaxy instance over Apache by Asma Riyaz
2
by Asma Riyaz
Galaxy on HPC and Bright Cluster Manager? by Carlos Lijeron
3
by David Trudgian
Writing Auth Layer as WSGI Middleware by Stephen Rosen
0
by Stephen Rosen
Galaxy Tool Shed security vulnerability by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
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