Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Planemo test fail if sys.error writen to by Christian Brenninkme...
1
by Peter Cock
GCC2015: Early Reg closes 22 May; Call for Birds-of-a-feather; and more by Dave Clements-2
0
by Dave Clements-2
Tool failure due to PYTHONPATH in job environment after upgrade to 15.03 by Brian Claywell-2
1
by Nate Coraor (nate@bx...
file_path passed directly to wrappers by Sabrina rodriguez
1
by Nate Coraor (nate@bx...
Login problems with Galaxy on Chrome, Firefox is running fine, where should I look? by Melissa Cline
1
by Martin Čech
reference in builds.txt by Sabrina rodriguez
2
by Hans-Rudolf Hotz
trinity tool form not allowing "None" input for strand-specificity by Christian Schudoma (...
4
by Peter Cock
'Boolean' parameter type misbehaves in tool tests if truevalue starts with hyphen? by Peter Briggs
3
by Peter Briggs
Questions about deploying galaxy on Azure by Marc
2
by Marc
sender address of galaxy tool report by Rémy Dernat
2
by John Chilton-4
History/Dataset UUID instead of integer ID? by Ben Bimber
2
by Ben Bimber
bam split and gatk calling by Roberto Alonso CIPF
6
by Roberto Alonso CIPF
find UUID of current history in tool XML wrapper? by Ben Bimber
10
by Dooley, Damion
Galaxy on CentOS? by Carlos Lijeron
8
by James Taylor-4
Re. find UUID of current history in tool XML wrapper? (Ben Bimber) by Dooley, Damion
0
by Dooley, Damion
Problem adding system build for visualization by fourie.joubert@up.ac...
0
by fourie.joubert@up.ac...
Job submission failed by Vipin TS
8
by Vipin TS
use of copied history while original user account deleled (and purged) by Olivia Doppelt
1
by John Chilton-4
Possible to pass hostName to a tool? by Ben Bimber
1
by John Chilton-4
Fwd: Failure to set attributes_type metadata for interval files / error in gff_filter_by_attribute tool by Marius van den Beek
2
by Dannon Baker-2
May 2015 Galactic News (and 2 GCC2015 deadlines today) by Dave Clements-2
0
by Dave Clements-2
Configuring galaxy to run on LSF by Asma Riyaz
1
by Ping
Migrating user account from galaxy specific to LDAP by Teshome Dagne Muluge...
5
by Eric Rasche-2
Galaxy for Natural Language Processing by Keith Suderman
9
by Keith Suderman
new tool works correctly but galaxy thinks it failed by ryang
10
by Linda Bakker
<code> tagset in tools by Simon Gladman-2
3
by Simon Gladman-2
Data Libraries by ryang
4
by ryang
Authenticating Against Galaxy from within a tool? by Ben Bimber
3
by Ben Bimber
optional tool arguments by ryang
3
by ryang
Question about automated cleanup scripts by Van Der Pol William
0
by Van Der Pol William
PR 149 by Roberto Alonso CIPF
3
by Peter Cock
UnmappedClassError: Class 'kombu.transport.sqlalchemy.Message' is not mapped by Peter Cock
3
by Dannon Baker-2
follow up question regarding the 'toolform-upgrade' by Hans-Rudolf Hotz
1
by Björn Grüning-3
History panel error by Jose Juan Almagro Ar...
8
by Dannon Baker-2
SSL/LDAP configuration for CloudMan/Galaxy by David Kovalic
3
by David Kovalic
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