Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Issue writing functional tool test with repeat tag in config by Christy Shafer
3
by Eric Rasche-2
Problem killing jobs (via Admin>Manage Jobs) by richjp
0
by richjp
GCC2015 Registration and Lodging Scholarship for US-Based Post-Docs and Students by Dave Clements-2
0
by Dave Clements-2
Adding a dataset to a dataset list breaks "Run this job again" by Brian Claywell-2
1
by John Chilton-4
metadata in parallelization by Roberto Alonso
1
by John Chilton-4
pbs/torque config by Rui Wang
1
by John Chilton-4
Re: Tool param type "library_data" (Dooley, Damion) by Dooley, Damion
4
by Dooley, Damion
April GalaxyAdmins Meetup: Video and Slides are now available by Dave Clements-2
0
by Dave Clements-2
GCC2015 Oral Presentation Abstract Submission closes 20 April by Dave Clements-2
1
by Dave Clements-2
anybody seen this class of error before? by Langhorst, Brad
2
by Dannon Baker-2
Error generating Picard indexes when using data_manager_gatk_picard_index_builder from the main tool shed by Paulo Silva
0
by Paulo Silva
metadata in parallelization by Roberto Alonso CIPF
0
by Roberto Alonso CIPF
Difference between GitHub and Mercurial Galaxy download... by Asma Riyaz
2
by Martin Čech-2
substitution of special characters in arguments of galaxy tools by Wang, Yu
1
by Eric Rasche-2
Older galaxy I'm keeping alive by drip feed, has problem restarting when I turn debug off. by Dooley, Damion
6
by Dannon Baker-2
Using synchronous method to upload multiple files by codap
5
by codap
April GalaxyAdmins Meetup: April 16 by Dave Clements-2
2
by Dave Clements-2
Geting integer value from InputValueWrapper in plugin xml file by Christian Brenninkme...
2
by John Chilton-4
pushing toolshed directories to our own repo by Nikhil Joshi-2
1
by John Chilton-4
question about error output by Roberto Alonso CIPF
1
by John Chilton-4
$REMOTE_USER by Wang, Yu
2
by Wang, Yu
Automated Tool Tests w/ Data Tables by Jeremy Liu
2
by Peter Cock
problems wit upgrading to "latest_15.03" - 'UniverseApplication' object has no attribute 'control_worker' by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
problem with revision updates for repositories. by Anna Terry
9
by Anna Terry
MySQL InnoDB - Execution Order by McCully, Dwayne (NIH...
1
by David Trudgian
Visualization in anonymous mode ? by Loraine Guéguen
5
by Carl Eberhard
Tests not being run on toolsheds? by Peter Briggs
9
by Peter Cock
Problems after upgrade by C. Ch.
2
by Dannon Baker-2
Tool Shed installs: coercing to Unicode: need string or buffer, NoneType found by Peter Cock
0
by Peter Cock
Escaped HTML show in import-workflow red message by Peter Cock
1
by Peter Cock
a question on data manager and data table by Rui Wang
2
by Daniel Blankenberg
DRMAA chmod to world-writable if to user chown fails should not be default? by David Trudgian
2
by David Trudgian
Multiple outputs of unknown types by David Kelly
2
by Daniel Blankenberg
Galaxy ToolShed Update Problem by 孙兆朕
2
by Martin Čech
Cloning state when installing tools. by Carlos Lijeron
1
by John Chilton-4
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