Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
planemo questions by Christian Brenninkme...
1
by Peter Cock
splitting bams bai by Roberto Alonso CIPF
0
by Roberto Alonso CIPF
GCC2015 Registration is Open! by Dave Clements-2
0
by Dave Clements-2
error in Galaxy (lefse) by Borruso Luigimaria
1
by Jennifer Hillman-Jac...
Announcement: Galaxy Docker Image 15.03 by Björn Grüning-3
4
by Michael Crusoe
InvalidRequestError: kombu.transport.sqlalchemy.Queue by Asma Riyaz
1
by Dannon Baker-2
README.rst missing on Tool Shed display? by Peter Cock
0
by Peter Cock
question about splitting bams by Roberto Alonso CIPF
3
by Roberto Alonso CIPF
Shared Data Library issues with permissions by cganote@iu.edu
1
by Martin Čech
Serving a galaxy instance over Apache by Asma Riyaz
2
by Asma Riyaz
Galaxy on HPC and Bright Cluster Manager? by Carlos Lijeron
3
by David Trudgian
Writing Auth Layer as WSGI Middleware by Stephen Rosen
0
by Stephen Rosen
Galaxy Tool Shed security vulnerability by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Issue writing functional tool test with repeat tag in config by Christy Shafer
3
by Eric Rasche-2
Problem killing jobs (via Admin>Manage Jobs) by richjp
0
by richjp
GCC2015 Registration and Lodging Scholarship for US-Based Post-Docs and Students by Dave Clements-2
0
by Dave Clements-2
Adding a dataset to a dataset list breaks "Run this job again" by Brian Claywell-2
1
by John Chilton-4
metadata in parallelization by Roberto Alonso
1
by John Chilton-4
pbs/torque config by Rui Wang
1
by John Chilton-4
Re: Tool param type "library_data" (Dooley, Damion) by Dooley, Damion
4
by Dooley, Damion
April GalaxyAdmins Meetup: Video and Slides are now available by Dave Clements-2
0
by Dave Clements-2
GCC2015 Oral Presentation Abstract Submission closes 20 April by Dave Clements-2
1
by Dave Clements-2
anybody seen this class of error before? by Langhorst, Brad
2
by Dannon Baker-2
Error generating Picard indexes when using data_manager_gatk_picard_index_builder from the main tool shed by Paulo Silva
0
by Paulo Silva
metadata in parallelization by Roberto Alonso CIPF
0
by Roberto Alonso CIPF
Difference between GitHub and Mercurial Galaxy download... by Asma Riyaz
2
by Martin Čech-2
substitution of special characters in arguments of galaxy tools by Wang, Yu
1
by Eric Rasche-2
Older galaxy I'm keeping alive by drip feed, has problem restarting when I turn debug off. by Dooley, Damion
6
by Dannon Baker-2
Using synchronous method to upload multiple files by codap
5
by codap
April GalaxyAdmins Meetup: April 16 by Dave Clements-2
2
by Dave Clements-2
Geting integer value from InputValueWrapper in plugin xml file by Christian Brenninkme...
2
by John Chilton-4
pushing toolshed directories to our own repo by Nikhil Joshi-2
1
by John Chilton-4
question about error output by Roberto Alonso CIPF
1
by John Chilton-4
$REMOTE_USER by Wang, Yu
2
by Wang, Yu
Automated Tool Tests w/ Data Tables by Jeremy Liu
2
by Peter Cock
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