Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
restricted data upload from server folder by De Smet Matthias
1
by Ross-2
Installing workflows from the Tool Shed is very confusing by Peter Cock
3
by Peter Cock
fml_gff3togtf: GTF-to-BED failes on numpy in Galaxy by Curtis Hendrickeduso...
2
by Will Holtz
Workflow bug when *.loc entries are missing by Peter Cock
10
by Peter Cock
changing usage indicator by Nikhil Joshi-2
3
by Nikhil Joshi-2
NGINX uWSGI with require_login needs uwsgi_param SCRIPT_NAME ''; by David Trudgian
2
by David Trudgian
April! Galactic News! by Dave Clements-2
0
by Dave Clements-2
using DataManager to add custom genomes by Nikhil Joshi-2
2
by Daniel Blankenberg
test/base/twilltestcase.py - Converting local (test-data) bam to sam failed by Peter Cock
5
by Peter Cock
value_from_basic - KeyError: 'base_name', was: Tests not being run on toolsheds? by Peter Cock
4
by Peter Cock
wrapper accepts fastqcssanger when it shouldn't by Nikhil Joshi-2
1
by Peter Cock
dat quota by Williams, Charles Ho...
1
by Dannon Baker-2
Trouble maintaining Galaxy config on cloud instance by David Kovalic
2
by David Kovalic
storing "set max value" in trackster for wig file display by Hans-Rudolf Hotz
1
by Jeremy Goecks-4
strange issue on TEST toolshed by Lukasse, Pieter
1
by Dave Bouvier
problem with uploading SRA file to our custom galaxy by Nikhil Joshi-2
4
by John Chilton-4
GalaxyAdmins Online Meetup on 19 February by Dave Clements-2
4
by Hans-Rudolf Hotz
Trouble maintaining Galaxy config on cloud by David Kovalic-2
0
by David Kovalic-2
data collections - workflow - bug? by Torsten Houwaart
4
by John Chilton-4
Safe / possible to sync toolshed tools and deps from another machine? by David Trudgian
2
by David Trudgian
Multiple-select checkbox parameters not using default values by Peter Cock
2
by Peter Cock
simple way to refer to the repository install directory from a tool by Langhorst, Brad
2
by Langhorst, Brad
Information Galaxy-P by Tercilio Calsa Jr
0
by Tercilio Calsa Jr
pkg_resources.py in lib? by Sveinung Gundersen
0
by Sveinung Gundersen
Sorting users by last login by Jose Juan Almagro Ar...
1
by Hans-Rudolf Hotz
wrong validation message in toolshed by Lukasse, Pieter
3
by Lukasse, Pieter
Ideas: allow Fieldset in tool forms by Gildas Le Corguillé
1
by John Chilton-4
Questions about Whole Exome Sequencing in Galaxy by Jiadi Xu
0
by Jiadi Xu
Problems installing package_bx_python_0_7 from Tool Shed by Peter Cock
0
by Peter Cock
March 2015 Galaxy Release (v 15.03) by Jennifer Hillman-Jac...
1
by Peter Cock
deleting directories from toolshed repo by Nikhil Joshi-2
1
by Daniel Blankenberg
Comment on Training Documentation by Dooley, Damion
5
by Dooley, Damion
Saving a Galaxy visualization (e.g. PNG or PDF) into the history / workflow by Peter Cock
3
by Peter Cock
TopHat error by Scott Szakonyi
1
by Jennifer Hillman-Jac...
(no subject) by hanxl
1
by Jennifer Hillman-Jac...
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