Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
liftOver functional tests failed by Anne Pajon-2
2
by Anne Pajon-2
Difference between hg pull -u (and) hg update stable? by Carlos Lijeron
1
by Dannon Baker-2
Changing fasta_to_tabular_converter.py by Peter Cock
0
by Peter Cock
Problem to effectively trace logs by Amandine VELT
1
by John Chilton-4
Galaxy Update Problem by 孙兆朕
1
by John Chilton-4
RFC: new param attribute for Galaxy tool XML by Björn Grüning-3
3
by Björn Grüning-3
Instances Working with Merged Ephemerals by Stephen Rosen
3
by Dinanath Sulakhe-2
Re: Galaxy tool shed alert for new repository named blast_reporting by Peter Cock
2
by Peter Cock
join bam results in one file by Roberto Alonso CIPF
0
by Roberto Alonso CIPF
Tool tests failing on Main Tool Shed with "Exception: Job in error state." by Peter Cock
1
by Peter Cock
The March 2015 Galaxy News by Dave Clements-2
0
by Dave Clements-2
Interested in GSOC idea "Docker Swarm and Compose" & ask for advices. by afe.young@gmail.com
2
by Martin Čech
gatk tool config file by Roberto Alonso CIPF
1
by Peter Cock
Authentication failed when pushing to tool shed by Erwan Delage
0
by Erwan Delage
Please post a Galaxy vacancy at the University of Oslo by vazovn
0
by vazovn
Tool Testing: field inputs that occur inside repeat tag by Dooley, Damion
7
by John Chilton-4
problems installing tool dependency by bflogalaxy
7
by bflogalaxy
Database deadlock with large workflows + dataset collections by Aaron Petkau
2
by Aaron Petkau
$GALAXY_TEST_DB_TEMPLATE failing with KeyError: <VerNum(127)> by Peter Cock
2
by Peter Cock
problem with latest toolshed devteam cuffmerge wrapper multi-select by Nikhil Joshi-2
4
by John Chilton-4
custom java tools.xml : problem with classpath by Pierre Lindenbaum
12
by Pierre Lindenbaum
Importing file via FTP can silently fail, [Errno ftp error] 550 by Peter Cock
6
by Peter Cock
Subject: Serving Galaxy at a sub directory - symptoms without "filter-with = proxy-prefix" by Dooley, Damion
0
by Dooley, Damion
problems splitting by Roberto Alonso CIPF
14
by Roberto Alonso CIPF
Tophat2 Problem by Lapointe, David
0
by Lapointe, David
Serving Galaxy at a sub directory - symptoms without "filter-with = proxy-prefix" by Peter Cock
2
by Eric Rasche-2
GCC2015 Abstract Submission is Open by Dave Clements-2
0
by Dave Clements-2
charts by Michael Thon
1
by Aysam Guerler
ValueError: Attribute 'fields' does not accept objects of type <type 'list'> by Peter Cock
2
by Peter Cock
tophat error by Michael Thon
12
by Björn Grüning-3
Hooking a dataset full deletion by Raffaele Montella
3
by John Chilton-4
History options confirmation dialog boxes by Jose Juan Almagro Ar...
2
by Dannon Baker-2
MySQL or Postgres size and growth? by McCully, Dwayne (NIH...
1
by Dannon Baker-2
S3/Swift object store cache path and `extra_dir`s by Brian Claywell-2
2
by Brian Claywell-2
(no subject) by Briand, Sheldon
2
by Briand, Sheldon
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