Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
biopython installation by Lapointe, David
1
by Peter Cock
Galaxy CloudMan instance - share history broken by Anne Pajon-2
0
by Anne Pajon-2
Galaxy server and ssl by Scott Szakonyi
4
by Scott Szakonyi
Setup Galaxy with Son of Grid by Vipul Patel
0
by Vipul Patel
apache proxy by Michael Thon
1
by Dannon Baker-2
fastq format recognition by Michael Thon
7
by Michael Thon
LD_LIBRARY_PATH not exporting to galaxy by Nikhil Joshi-2
10
by Nikhil Joshi-2
Starting uWSGI by Nicholas Kline
3
by Dannon Baker-2
Galaxy CloudMan instance - missing link 'display at UCSC' for bed files by Anne Pajon-2
7
by Anne Pajon-2
Getting empty files when upload by Erwan Delage
0
by Erwan Delage
R lib dependencies in the toolshed by Nikos Sidiropoulos
2
by Nikos Sidiropoulos
Re: Tool test failure by Dooley, Damion
0
by Dooley, Damion
restricting new accounts by Michael Thon
1
by Björn Grüning-3
Tool test failure - I could use some help... by Dooley, Damion
2
by Dooley, Damion
tool xml to fetch choices from a URL by Langhorst, Brad
1
by John Chilton-4
Question Regarding fetch_eggs &c. vs pip by Stephen Rosen
9
by Dannon Baker-2
BWA alignment problem in Galaxy by Xiong, Min,
2
by Jennifer Hillman-Jac...
Adding options to a tool by Scott Szakonyi
2
by Hans-Rudolf Hotz
Accessing Specific Entries in Data Table by Jeremy Liu
0
by Jeremy Liu
gui and command line trouble by Edlund, Anna
0
by Edlund, Anna
"This job is waiting to run" by ryang
2
by ryang
backtrace -> bug? by Langhorst, Brad
0
by Langhorst, Brad
galaxy of dm6 by Jian Lu
0
by Jian Lu
tool shed updates broken on my local server by Anne Pajon-2
4
by Anne Pajon-2
Bug? Uploaded files not adding to history (Nginx upload) by Federico Zambelli-2
4
by Federico Zambelli-2
parallesim by Roberto Alonso CIPF
7
by Roberto Alonso CIPF
galaxy report page - server error solution? by fernandez Edgar
6
by John Chilton-4
parallelism by Roberto Alonso
1
by Daniel Blankenberg
Tools to download SRA datasets from GEO by ryang
2
by ryang
binaries version tracking by philippe
2
by philippe
Starting uWSGI by Nicholas Kline
6
by Nicholas Kline
Tool Tests failing with "Exception: History in error state." by Peter Cock
6
by Peter Cock
Interested in hosting GCC2016? by Dave Clements-2
0
by Dave Clements-2
Questions about upgrading a toolshed instance by Misharl Monsoor
1
by Martin Čech
concatenate_datasets docker image can't create output by jeltje
8
by jeltje
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