Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9224)
Replies Last Post Views
problems installing tool dependency by bflogalaxy
7
by bflogalaxy
Database deadlock with large workflows + dataset collections by Aaron Petkau
2
by Aaron Petkau
$GALAXY_TEST_DB_TEMPLATE failing with KeyError: <VerNum(127)> by Peter Cock
2
by Peter Cock
problem with latest toolshed devteam cuffmerge wrapper multi-select by Nikhil Joshi-2
4
by John Chilton-4
custom java tools.xml : problem with classpath by Pierre Lindenbaum
12
by Pierre Lindenbaum
Importing file via FTP can silently fail, [Errno ftp error] 550 by Peter Cock
6
by Peter Cock
Subject: Serving Galaxy at a sub directory - symptoms without "filter-with = proxy-prefix" by Dooley, Damion
0
by Dooley, Damion
problems splitting by Roberto Alonso CIPF
14
by Roberto Alonso CIPF
Tophat2 Problem by Lapointe, David
0
by Lapointe, David
Serving Galaxy at a sub directory - symptoms without "filter-with = proxy-prefix" by Peter Cock
2
by Eric Rasche-2
GCC2015 Abstract Submission is Open by Dave Clements-2
0
by Dave Clements-2
charts by Michael Thon
1
by Aysam Guerler
ValueError: Attribute 'fields' does not accept objects of type <type 'list'> by Peter Cock
2
by Peter Cock
tophat error by Michael Thon
12
by Björn Grüning-3
Hooking a dataset full deletion by Raffaele Montella
3
by John Chilton-4
History options confirmation dialog boxes by Jose Juan Almagro Ar...
2
by Dannon Baker-2
MySQL or Postgres size and growth? by McCully, Dwayne (NIH...
1
by Dannon Baker-2
S3/Swift object store cache path and `extra_dir`s by Brian Claywell-2
2
by Brian Claywell-2
(no subject) by Briand, Sheldon
2
by Briand, Sheldon
biopython installation by Lapointe, David
1
by Peter Cock
Galaxy CloudMan instance - share history broken by Anne Pajon-2
0
by Anne Pajon-2
Galaxy server and ssl by Scott Szakonyi
4
by Scott Szakonyi
Setup Galaxy with Son of Grid by Vipul Patel
0
by Vipul Patel
apache proxy by Michael Thon
1
by Dannon Baker-2
fastq format recognition by Michael Thon
7
by Michael Thon
LD_LIBRARY_PATH not exporting to galaxy by Nikhil Joshi-2
10
by Nikhil Joshi-2
Starting uWSGI by Nicholas Kline
3
by Dannon Baker-2
Galaxy CloudMan instance - missing link 'display at UCSC' for bed files by Anne Pajon-2
7
by Anne Pajon-2
Getting empty files when upload by Erwan Delage
0
by Erwan Delage
R lib dependencies in the toolshed by Nikos Sidiropoulos
2
by Nikos Sidiropoulos
Re: Tool test failure by Dooley, Damion
0
by Dooley, Damion
restricting new accounts by Michael Thon
1
by Björn Grüning-3
Tool test failure - I could use some help... by Dooley, Damion
2
by Dooley, Damion
tool xml to fetch choices from a URL by Langhorst, Brad
1
by John Chilton-4
Question Regarding fetch_eggs &c. vs pip by Stephen Rosen
9
by Dannon Baker-2
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