Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Galaxy installation inside a secure environment by azab
1
by John Chilton-4
Pulsar on a remote (SGE) cluster by Joe Greer
1
by John Chilton-4
condor jobs by Shrum, Donald C
1
by John Chilton-4
data sharing without duplication? by fernandez Edgar
2
by Dannon Baker-2
Nothing being tested on Test and main Tool Shed? by Peter Cock
17
by Peter Cock
Galactic News!!! February 2015 Edition by Dave Clements-2
0
by Dave Clements-2
SGE integration by ryang
0
by ryang
NFS configuration questions + NFS /etc/fstab configuration issue with AMI issue by Scott Jeschonek
3
by Scott Jeschonek
Data manager .loc file not installing in correct place by Jeremy Liu
2
by Jeremy Liu
Galaxy XML from python's argparse by Eric Rasche-2
0
by Eric Rasche-2
Re: CloudMan + Ansible + AWS by Brad Chapman-2
1
by Dannon Baker-2
Tool development - Selecting a single item from input dataset. by Vimalkumar Velayudha...
3
by John Chilton-4
History not updated after upload from custom data source by Jonathan Laperle
1
by Jonathan Laperle
Adding a new web-service or perhaps a "webapp" to Galaxy by Lukasse, Pieter
5
by Dave Bouvier
show stopper for my galaxy installation by fernandez Edgar
5
by Nicola Soranzo-2
Manually installing rsem_datatypes package from toolshed by ryang
2
by ryang
Local Galaxy + Google Drive ? by Nicholas Kline
1
by Martin Čech
galaxy and torque - resource allocation by fernandez Edgar
9
by fernandez Edgar
GALAXY_DATA_INDEX_DIR problem by Lukasse, Pieter
0
by Lukasse, Pieter
dataset collections by Jorrit Boekel
1
by John Chilton-4
Setting a file download link in Galaxy help by XiaoTao Jiang
1
by John Chilton-4
PATH set in tool env.sh leaking through to set_metadata.py by Wolfgang Maier
7
by John Chilton-4
Oct '14 and Jan'15 release, trouble installing tools from the toolshed, resetting metadata for installed repositories by Yves Gagnon
1
by Yves Gagnon
Unable to get data from UCSC by Anna Terry
7
by Anna Terry
Partial automation for generating those twisty R dependency tool shed installation sequences by Ross-2
7
by Ross-2
problem with launching Galaxy cloud by Gurova, Katerina
1
by Dannon Baker-2
Problem with Galaxy installation by FRITSCH Emilie - L. ...
2
by FRITSCH Emilie - L. ...
Web/Job scaling question by Josephine Palencia
1
by Nate Coraor (nate@bx...
Fasta Datatype Adjustments by marcoalbuquerque
1
by John Chilton-4
GalaxyAdmins is Back! by Dave Clements-2
1
by Dave Clements-2
Tool param type "library_data" by Dooley, Damion
5
by Dooley, Damion
galaxyp build for docker by Evan Bollig PhD
1
by Björn Grüning-3
Unable to connect galaxy server after upgrade to latest version by Ping
2
by Ping
GCC2015 Training Day Topic Voting is open. Please vote! by Dave Clements-2
0
by Dave Clements-2
Manually adding new tools from toolshed by ryang
4
by John Chilton-4
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