Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Strange issue with datatypes in Galaxy version of last week by Lukasse, Pieter
5
by Lukasse, Pieter
Nginx + HTTPS by Nicholas Kline
1
by Peter van Heusden
order of tools installed from toolshed by Wolfgang Maier
6
by Wolfgang Maier
Unable to add tools from tool shed by ryang
3
by ryang
"Repository dependency definitions" broken on Test Tool Shed by Peter Cock
0
by Peter Cock
Manage jobs interface error by C. Ch.
4
by C. Ch.
Tool Shed Categories by BiochemPhD
6
by Martin Čech
Failure in uploading datasets by David Matthews-2
2
by Thomas Green
Custom Builds not accessible for user by Ulf
3
by Ulf
No handlers could be found for logger "galaxy.util.json" by C. Ch.
5
by C. Ch.
galaxy with torque by fernandez Edgar
16
by Nate Coraor (nate@bx...
tool with conditional parameter broken on release 2014.08.11 by Anne Pajon-2
0
by Anne Pajon-2
Excessive memory consumption on local galaxy by Langhorst, Brad
1
by John Chilton-4
No API way to delete a galaxy data library folder? by Dooley, Damion
2
by Dooley, Damion
Workflow Variables by Adhemar
1
by Björn Grüning-3
how to use api to log into Galaxy? by xlwang
1
by John Chilton-4
Building reference genome with Data Manager socket.error: [Errno 110] Connection timed out by Vova Korniychuk
0
by Vova Korniychuk
no reference genome list in variant_selector tool by Evan Bollig PhD
1
by Evan Bollig PhD
Page generated by a Galaxy behind HTTPS(Nginx) makes HTTP calls by maxime.levesque
1
by John Chilton-4
Hovering over a history dataset lights up the other datasets....? by Hans-Rudolf Hotz
1
by Carl Eberhard
small issue with the black frame around displayed history item by Hans-Rudolf Hotz
1
by Carl Eberhard
Help testing Galaxy - new release is coming soon by Björn Grüning-3
2
by Martin Čech
Trimmomatic wrapper for Galaxy by Peter Cock
2
by Michael R. Crusoe
Deleted tool temp dir by Pandorin
1
by John Chilton-4
Nginx Config by Nicholas Kline
2
by Dannon Baker-2
Galaxy Docker and Tool Shed repository for Chinese researchers? by shenwiyn
1
by Dannon Baker-2
December 2014 Galaxy Newsletter by Dave Clements-2
0
by Dave Clements-2
Creation of a backup/migrate script for data/users by Rémy Dernat
2
by Rémy Dernat
datatype dependencies by Eric Rasche
7
by Igor Topcin
galaxy fails to start when setuptools>=6.1 by Evan Bollig PhD
1
by Peter Cock
samtools: command not found in bowtie2 by Anna Terry
10
by Anna Terry
Egg build failed for bx_python 0.7.2 by Rafael Guerrero-Pres...
1
by Dannon Baker-2
importing a large number of samples via a sample sheet by ryang
4
by Dannon Baker-2
How to get cleanup script to run in cron job ? by jamesp
2
by jamesp
Bug with multiple reverse proxies by Jan Kanis-2
5
by John Chilton-4
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