Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9199)
Replies Last Post Views
Hovering over a history dataset lights up the other datasets....? by Hans-Rudolf Hotz
1
by Carl Eberhard
small issue with the black frame around displayed history item by Hans-Rudolf Hotz
1
by Carl Eberhard
Help testing Galaxy - new release is coming soon by Björn Grüning-3
2
by Martin Čech
Trimmomatic wrapper for Galaxy by Peter Cock
2
by Michael R. Crusoe
Deleted tool temp dir by Pandorin
1
by John Chilton-4
Nginx Config by Nicholas Kline
2
by Dannon Baker-2
Galaxy Docker and Tool Shed repository for Chinese researchers? by shenwiyn
1
by Dannon Baker-2
December 2014 Galaxy Newsletter by Dave Clements-2
0
by Dave Clements-2
Creation of a backup/migrate script for data/users by Rémy Dernat
2
by Rémy Dernat
datatype dependencies by Eric Rasche
7
by Igor Topcin
galaxy fails to start when setuptools>=6.1 by Evan Bollig PhD
1
by Peter Cock
samtools: command not found in bowtie2 by Anna Terry
10
by Anna Terry
Egg build failed for bx_python 0.7.2 by Rafael Guerrero-Pres...
1
by Dannon Baker-2
importing a large number of samples via a sample sheet by ryang
4
by Dannon Baker-2
How to get cleanup script to run in cron job ? by jamesp
2
by jamesp
Bug with multiple reverse proxies by Jan Kanis-2
5
by John Chilton-4
Is anyone using composite datatype uploads? by Aysam Guerler
3
by John Chilton-4
tool xml data_columns interface by Jorrit Boekel
1
by John Chilton-4
ymaj error in galaxy by pjdias0
0
by pjdias0
handler processes suddenly consuming all RAM by Langhorst, Brad
1
by Langhorst, Brad
rename output dataset in workflow - input dataset variable by galapah
7
by John Chilton-4
more control over the "docker" command by Dan Tenenbaum-2
4
by John Chilton-4
Some plugin for digital normalization by Cristian Alejandro R...
6
by Peter Cock
master_api_key currently doesn't benefit from a real admin's key?! by Dooley, Damion
4
by Dooley, Damion
Fw: Re: galaxy server file upload problem by 홍종희
2
by Dannon Baker-2
Re: galaxy-dev Digest, Vol 101, Issue 29 by Dooley, Damion
0
by Dooley, Damion
galaxy server file upload problem by 홍종희
2
by 홍종희
Local Galaxy Apache Config by Nicholas Kline
0
by Nicholas Kline
Problem to upload data to Galaxy when using pbed file format by tjkarlsson
1
by John Chilton-4
Public toolshed giving "internal server error" by Peter Briggs
7
by Peter Cock
how to use api to log in Galaxy? by xlwang
0
by xlwang
MarkupSafe egg missing? e.args[1].key != e.args[0].key by Peter Cock
9
by Peter Cock
Help with new PscanChIP test tool shed repository. by Federico Zambelli
0
by Federico Zambelli
Is release_2014.10.06 "official"? by Lance Parsons
1
by John Chilton-4
customize the Upload File tool form (version 1.1.4) by Christophe Antoniews...
6
by Christophe Antoniews...
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