Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9199)
Replies Last Post Views
Test failure, JSONDecodeError: Unpaired high surrogate by Peter Cock
2
by John Chilton-4
Editing admin rights on an (empty) ToolShed repo by Peter Cock
0
by Peter Cock
ebio_deseq tool error by Sergei Manakov
0
by Sergei Manakov
Galaxy with Rocks Cluster / Submitting Job As Real User by Tim Gustafson
0
by Tim Gustafson
Role of suite_config.xml in current Tool Shed? by Peter Cock
0
by Peter Cock
Database Error When Bootstrapping Tool Shed by bgrande
0
by bgrande
Dependencies not working on toolshed? by Lukasse, Pieter
5
by Peter Cock
My CloudMan EC2 instance won't start Galaxy by Jim White
2
by Jim White
Is the "new tool repositories summary" in the monthly newsletter useful? by Dave Clements-2
5
by Dave Clements-2
Can't change working directory during tool dependency installation by bgrande
2
by bgrande
Citations tag not working by jamesp
2
by Lukasse, Pieter
SLURM timeouts by hackdna
0
by hackdna
filtering a <param> of type 'data' so only one type is available by Dan Tenenbaum
6
by Stef van Lieshout
Determining galaxy api path automatically from a tool via dynamic_options? by Dooley, Damion
2
by Dooley, Damion
2bit to FASTA tool by Freese, Nowlan
0
by Freese, Nowlan
hg38 by Mark Lindsay
0
by Mark Lindsay
Uploading workflow to toolshed by Mikel Egaña Arangure...
3
by Mikel Egaña Arangure...
Blast+ Wrapper: blastdbcmd: range parameter by M_Enders
2
by Peter Cock
Galaxy instance file upload problem by Bongsoo Park
4
by Enis Afgan-2
Using LEfSe for paired/matched data analysis by Greathouse, Leigh (N...
0
by Greathouse, Leigh (N...
question about GALAXY_SLOTS by Wolfgang Maier
6
by Wolfgang Maier
galaxy.eggs.EggNotFetchable: ['pexpect'] by Shrum, Donald C
0
by Shrum, Donald C
Re: galaxy-dev Digest, Vol 100, Issue 15 by Iry Witham
0
by Iry Witham
Re: galaxy-dev Digest, Vol 100, Issue 10 by Iry Witham
0
by Iry Witham
CloudMan auto-scaling - Use spot instance for worker node? by rpetit
1
by Enis Afgan-2
Galaxy Training Network by Dave Clements-2
0
by Dave Clements-2
Create select list parameter from input by Nikos Sidiropoulos
0
by Nikos Sidiropoulos
Help with Galaxy server migration by Sarah Diehl-2
2
by Sarah Diehl-2
Login issue with a nginx proxy by Alexandre Loywick-2
0
by Alexandre Loywick-2
snpEff and java issue by Iry Witham
0
by Iry Witham
snpeff tool for Galaxy extra_files_path by Jim Johnson-3
7
by Jim Johnson-3
Set output dbkey from parameter value by Nikos Sidiropoulos
4
by Nikos Sidiropoulos
UCSC Main table browser by Shrum, Donald C
1
by John Chilton-4
Assertion errors when starting Galaxy by ricky_pz2
0
by ricky_pz2
Galaxy database corrupted by tchu
0
by tchu
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