Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Uploading workflow to toolshed by Mikel Egaña Arangure...
3
by Mikel Egaña Arangure...
Blast+ Wrapper: blastdbcmd: range parameter by M_Enders
2
by Peter Cock
Galaxy instance file upload problem by Bongsoo Park
4
by Enis Afgan-2
Using LEfSe for paired/matched data analysis by Greathouse, Leigh (N...
0
by Greathouse, Leigh (N...
question about GALAXY_SLOTS by Wolfgang Maier
6
by Wolfgang Maier
galaxy.eggs.EggNotFetchable: ['pexpect'] by Shrum, Donald C
0
by Shrum, Donald C
Re: galaxy-dev Digest, Vol 100, Issue 15 by Iry Witham
0
by Iry Witham
Re: galaxy-dev Digest, Vol 100, Issue 10 by Iry Witham
0
by Iry Witham
CloudMan auto-scaling - Use spot instance for worker node? by rpetit
1
by Enis Afgan-2
Galaxy Training Network by Dave Clements-2
0
by Dave Clements-2
Create select list parameter from input by Nikos Sidiropoulos
0
by Nikos Sidiropoulos
Help with Galaxy server migration by Sarah Diehl-2
2
by Sarah Diehl-2
Login issue with a nginx proxy by Alexandre Loywick-2
0
by Alexandre Loywick-2
snpEff and java issue by Iry Witham
0
by Iry Witham
snpeff tool for Galaxy extra_files_path by Jim Johnson-3
7
by Jim Johnson-3
Set output dbkey from parameter value by Nikos Sidiropoulos
4
by Nikos Sidiropoulos
UCSC Main table browser by Shrum, Donald C
1
by John Chilton-4
Assertion errors when starting Galaxy by ricky_pz2
0
by ricky_pz2
Galaxy database corrupted by tchu
0
by tchu
CloudMan with HTCondor and Slurm & mounting pathes by azab
1
by Enis Afgan-2
error running API with example_watch_folder.py by burdettn
2
by John Chilton-4
failure to export workflows by Wolfgang Maier
6
by Wolfgang Maier
missing "fastq groomer" tool on galaxy cloudman by NAMIT KUMAR
2
by Masoumeh Sikaroodi
quick note of thanks by Chris Dagdigian
1
by Dannon Baker-2
API : Max retries exceeded by Gildas Le Corguillé
3
by Gildas Le Corguillé
GATK2 java version related issues by Iry Witham
2
by Iry Witham
Why does Galaxy CloudMan 2.3 (ami-a7dbf6ce) run the boinc client? by Chris Dagdigian
1
by Dannon Baker-2
Anyone else having issues with cloudman cloudlaunch? by Chris Dagdigian
5
by Chris Dagdigian
Tool development: Is it possible to pass a user's id in dynamic_options() parameter? by Dooley, Damion
3
by Daniel Blankenberg
Is it possible to condition tool wrappers on external inputs? by Melissa Cline
1
by Daniel Blankenberg
Data uploaded with new upload tool doesn't get added to history by Peter van Heusden
4
by Dannon Baker-2
SQLalchemy InvalidRequestError by Ulf
7
by Dannon Baker-2
snpEf dataset generation errors by Iry Witham
0
by Iry Witham
CloudMan: Autoscaling =Unable to run this job due to a cluster error by rpetit
3
by Enis Afgan-2
Download tool-dependency with using a proxy and functional tests http 403 error by meisterJaeger
1
by John Chilton-4
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