Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
GATK2 reporting "Invalid argument value '/mnt/galaxy/tools/gatk2/bin/' at position 8." by Iry Witham
0
by Iry Witham
no universe_wsgi.ini & can't install tools from the standard toolshed because: "Initializing repository installation failed" by Chris Dagdigian
4
by John Chilton-4
ToolShed tool preview broken (TestToolShed too) by Peter Cock
1
by Peter Cock
testtoolshed internal server error by Stef van Lieshout
3
by Peter Cock
Internal Server Error on metadata reset by saketkc
1
by Martin Čech
Cloudman indices installation/configuration by Iry Witham
7
by Björn Grüning-3
clustalomega from toolshed installation issue by Isabelle Phan
2
by Isabelle Phan
Apache proxy, SSL, and UCSC get data by Lance Parsons
0
by Lance Parsons
Central tool shed installations fail due to redirect by Kandalaft, Iyad
1
by Kandalaft, Iyad
installing R bioconductor package DNAcopy gfortran setup_r_environment by Stef van Lieshout
0
by Stef van Lieshout
CfP: Reproducible Science Hackathon - Curriculum & Workflow Development by Tracy K. Teal
0
by Tracy K. Teal
Get Data - url upload (connection timed out) by elchia
2
by elchia
Simple standard for API use of a global user/key that all loaded tools can draw upon? by Dooley, Damion
3
by Dooley, Damion
Internal Server error when attemptng to use Admin Tab by David Bernick
3
by David Bernick
'KeyError' in workflow extraction when using newer tool version by Peter Briggs
2
by Peter Briggs
please subscribe by Ioana Cristina Chint...
0
by Ioana Cristina Chint...
Vagrant-Galaxy for development purposes by Kandalaft, Iyad
0
by Kandalaft, Iyad
Login with a system user by Daniel Ruiz Molina
2
by Will Holtz
bowtie_indices.loc for 'bowtie_wrappers' tool by Peter Briggs
0
by Peter Briggs
October 2014 Galaxy Newsletter by Dave Clements-2
0
by Dave Clements-2
Disk space issue - again by bgsbny
1
by Dannon Baker-2
2014 Galaxy Questionnaire by Dave Clements-2
0
by Dave Clements-2
datatype directory by David Hoover
1
by Peter Cock
Question about Terms and Conditions for public galaxy server under development by audrey michel
1
by Anton Nekrutenko-2
bwa and bwa-mem wrappers... by Anton Nekrutenko-2
0
by Anton Nekrutenko-2
Set a new metadata attribute by Nikos Sidiropoulos
2
by Hans-Rudolf Hotz
Cloudman installed tools missing referneces by Iry Witham
0
by Iry Witham
tool for STAR RNA-seq aligner by David Hoover
11
by David Hoover
sendmail from addr by Evan Bollig PhD
1
by John Chilton-4
Question re: email alerts on workflow errors by Evan Bollig PhD
1
by John Chilton-4
Error report via API? by Evan Bollig PhD
1
by John Chilton-4
DRMAA Slurm error by Pardo Diaz, Alfonso
1
by Pardo Diaz, Alfonso
Uploading .vcf files by Katherine Collins
1
by Nate Coraor (nate@bx...
IE 11 issues by bflogalaxy
10
by Dannon Baker-2
New post action with workflows : DeleteIntermediatesActionOutput by juliech
6
by juliech
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