Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Internal Server error when attemptng to use Admin Tab by David Bernick
3
by David Bernick
'KeyError' in workflow extraction when using newer tool version by Peter Briggs
2
by Peter Briggs
please subscribe by Ioana Cristina Chint...
0
by Ioana Cristina Chint...
Vagrant-Galaxy for development purposes by Kandalaft, Iyad
0
by Kandalaft, Iyad
Login with a system user by Daniel Ruiz Molina
2
by Will Holtz
bowtie_indices.loc for 'bowtie_wrappers' tool by Peter Briggs
0
by Peter Briggs
October 2014 Galaxy Newsletter by Dave Clements-2
0
by Dave Clements-2
Disk space issue - again by bgsbny
1
by Dannon Baker-2
2014 Galaxy Questionnaire by Dave Clements-2
0
by Dave Clements-2
datatype directory by David Hoover
1
by Peter Cock
Question about Terms and Conditions for public galaxy server under development by audrey michel
1
by Anton Nekrutenko-2
bwa and bwa-mem wrappers... by Anton Nekrutenko-2
0
by Anton Nekrutenko-2
Set a new metadata attribute by Nikos Sidiropoulos
2
by Hans-Rudolf Hotz
Cloudman installed tools missing referneces by Iry Witham
0
by Iry Witham
tool for STAR RNA-seq aligner by David Hoover
11
by David Hoover
sendmail from addr by Evan Bollig PhD
1
by John Chilton-4
Question re: email alerts on workflow errors by Evan Bollig PhD
1
by John Chilton-4
Error report via API? by Evan Bollig PhD
1
by John Chilton-4
DRMAA Slurm error by Pardo Diaz, Alfonso
1
by Pardo Diaz, Alfonso
Uploading .vcf files by Katherine Collins
1
by Nate Coraor (nate@bx...
IE 11 issues by bflogalaxy
10
by Dannon Baker-2
New post action with workflows : DeleteIntermediatesActionOutput by juliech
6
by juliech
Missing configuration and location files automatic creation by Julien Seiler-2
3
by Nate Coraor (nate@bx...
Workflow param error leads to template error by Paul-Michael Agapow
3
by Tim Booth
find bam index files by Ulf
1
by Nate Coraor (nate@bx...
Question about uploading a large application to the tool-shed by georgeweingart
2
by Björn Grüning-3
Problem writing functional tool tests with 'repeat' & 'conditional' tags by Peter Briggs
2
by Peter Briggs
Problem with tool dependencies when running functional tool tests by Peter Briggs
0
by Peter Briggs
Dependencies within dependencies by Christophe Antoniews...
1
by Ross-2
Main tool shed installation issues by Yves Gagnon
3
by Yves Gagnon
New version of vcflib wrappers by Anton Nekrutenko-2
0
by Anton Nekrutenko-2
This looks like a Galaxy bug in installation of tools with a complex repository dependency. by Melissa Cline
0
by Melissa Cline
Queueing system and job parameters by Velayutham, Prakash ...
3
by Nate Coraor (nate@bx...
Workflow step IDs: out of order? by Freek de Bruijn-2
1
by John Chilton-4
custom datatypes by Calvin Morrison
1
by Peter Cock
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