Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Incorrect revision getting referenced in a complex tool dependency - why? by Melissa Cline
3
by Melissa Cline
Tool Errors by Calvin Morrison
7
by Calvin Morrison
Amazon cloud setup for galaxy training by Anne Pajon-2
1
by Enis Afgan-2
Installing Galaxy on Freebsd 10.0 by kasperset
3
by kasperset
no capsule export from a local tool shed by Christophe Antoniews...
3
by Christophe Antoniews...
BAMtools in Galaxy by Anton Nekrutenko-2
0
by Anton Nekrutenko-2
Keeping Galaxy up to date by Thomas Bellembois
6
by Sebastian Schaaf
ToolShed test failure: NotFound: cannot find 'ucsc_display_sites' while searching for 'APP.config.ucsc_display_sites' by Peter Cock
2
by Peter Cock
problems with the varscan somatic tool by karin
0
by karin
BAM to SAM tool no way to get an unsorted SAM? by Alistair Chilcott
4
by Alistair Chilcott
How to escape % characters in tool parameters? by Melissa Cline
2
by Melissa Cline
Error executing workflow via API by burdettn
3
by burdettn
Output Excel file by Patrick Leyshock
3
by Patrick Leyshock
Concept for a Galaxy Versioned Fasta Data Retrieval Tool by Dooley, Damion
12
by Dooley, Damion
Join tool failure by Iry Witham
1
by Nate Coraor (nate@bx...
Examples of Galaxy tools in the toolsheds that install and run JAR files properly? by Melissa Cline
6
by Björn Grüning-3
Startup error after restoring Galaxy DB from backup by Graeme Grimes
2
by Graeme Grimes
"when else" in <conditional> ? RE: refresh_on_change : is this a valid attribute? Any other ideas/options?? by Lukasse, Pieter
6
by John Chilton-4
directory as an input file by philippe
2
by John Chilton-4
millions for rows in galaxy_session by Robert Baertsch
0
by Robert Baertsch
error with multi dataset tool run by Robert Baertsch
2
by Robert Baertsch
Proposal: Create a public archive of the GalaxyProject IRC Channel by Dave Clements-2
0
by Dave Clements-2
Retrieving json files by saketkc
2
by saketkc
API for multi-file upload by burdettn
1
by John Chilton-4
Error with functional tests on cluster by Sandra Derozier
1
by John Chilton-4
testing the visualization plugins by Hans-Rudolf Hotz
7
by Hans-Rudolf Hotz
Problem Running TopHat2 by changk16
6
by changk16
September 2014 Galaxy News by Dave Clements-2
0
by Dave Clements-2
Grouping of tools inside of toolbox does not work by Björn Grüning-3
1
by John Chilton-4
refresh_on_change : is this a valid attribute? Any other ideas/options?? by Lukasse, Pieter
0
by Lukasse, Pieter
Multiple output datasets by Martin Christiansen
9
by Stef van Lieshout
Re: Cluster jobs running as real user by Linda Cham
0
by Linda Cham
proxy / ssl by Shrum, Donald C
0
by Shrum, Donald C
Developer Events in Europe this Fall: Swiss-German Galaxy Tour by Dave Clements-2
0
by Dave Clements-2
problems with database migration 119 -> 120 by Hans-Rudolf Hotz
4
by Nate Coraor (nate@bx...
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