Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
How set the working and temp directories in external drive by jvdelarosa
1
by John Chilton-4
Packaging pycurl on toolshed by saketkc
6
by saketkc
setting SGE arguments in galaxy (cloudman) by Jim McCusker
5
by Enis Afgan-2
Announcing the UK Galaxy Community by Graham Etherington
3
by Björn Grüning-3
Question about composite blast datatypes by Eric Rasche
2
by Eric Rasche
Workflow Loop by Gorkem Erdogan
1
by Dannon Baker-2
Providing BLAST db in a data library by Ulf
11
by Peter Cock
Galaxy server broken with install of latest changes by Tony Kusalik
3
by Dannon Baker-2
Problems uploading files to a data library by jvdelarosa
4
by jvdelarosa
Installed tool invisible in Galaxy by Peter van Heusden
4
by Peter van Heusden
Determining datatype inheritance in tool XML Cheetah by Peter Cock
2
by Peter Cock
bug? by Langhorst, Brad
6
by Dannon Baker-2
can't install numpy from toolshed by bflogalaxy
3
by Nate Coraor (nate@bx...
Galaxy error by Beck, Emily A
3
by Nate Coraor (nate@bx...
Bug report: <page> within <help> by Philipp Brachvogel
3
by John Chilton-4
sql server timeout by Shrum, Donald C
1
by Dannon Baker-2
ToolShed error: samtools installation failure by Rui Wang
5
by Dannon Baker-2
"The status is being set to Never installed" by David Hoover
0
by David Hoover
changes to upload.py by bflogalaxy
2
by bflogalaxy
testtoolshed : python-2.7 installation error by Geert Vandeweyer-4
4
by Björn Grüning-3
condor compute cluster by Shrum, Donald C
1
by John Chilton-4
August 2014 Galaxy CloudMan release by Enis Afgan-2
0
by Enis Afgan-2
Packaging tools with language specific dependencies by Renato Alves
6
by Björn Grüning-3
Issues with dependencies for toolshed packages by Iry Witham
4
by Iry Witham
Re: Main Galaxy Tool Shed is running the next-stable branch by Eric Kuyt-2
1
by Greg Von Kuster
error using get( $__user_id__ ) in xml file in new Galaxy by burdettn
3
by burdettn
Serious start-up delay in next-stable by Björn Grüning-3
4
by Geert Vandeweyer-4
samtools installation error by Rui Wang
0
by Rui Wang
Galaxy Security Vulnerability by Nate Coraor (nate@bx...
2
by John Chilton-4
job not starting on cluster by Langhorst, Brad
1
by John Chilton-4
PHYLIP by philippe
0
by philippe
cufflinks suite 2.2.1 by Geert Vandeweyer-4
1
by Björn Grüning-3
start and end times? by Evan Bollig PhD
3
by Dannon Baker-2
Re: "HTTPerror : HTTP error 307 : temporary redirect" by Perley, Danielle
0
by Perley, Danielle
Adding Reference Genomes, builds.txt vs manual_builds.txt by Lance Parsons
0
by Lance Parsons
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