Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Galaxy error by Beck, Emily A
3
by Nate Coraor (nate@bx...
Bug report: <page> within <help> by Philipp Brachvogel
3
by John Chilton-4
sql server timeout by Shrum, Donald C
1
by Dannon Baker-2
ToolShed error: samtools installation failure by Rui Wang
5
by Dannon Baker-2
"The status is being set to Never installed" by David Hoover
0
by David Hoover
changes to upload.py by bflogalaxy
2
by bflogalaxy
testtoolshed : python-2.7 installation error by Geert Vandeweyer-4
4
by Björn Grüning-3
condor compute cluster by Shrum, Donald C
1
by John Chilton-4
August 2014 Galaxy CloudMan release by Enis Afgan-2
0
by Enis Afgan-2
Packaging tools with language specific dependencies by Renato Alves
6
by Björn Grüning-3
Issues with dependencies for toolshed packages by Iry Witham
4
by Iry Witham
Re: Main Galaxy Tool Shed is running the next-stable branch by Eric Kuyt-2
1
by Greg Von Kuster
error using get( $__user_id__ ) in xml file in new Galaxy by burdettn
3
by burdettn
Serious start-up delay in next-stable by Björn Grüning-3
4
by Geert Vandeweyer-4
samtools installation error by Rui Wang
0
by Rui Wang
Galaxy Security Vulnerability by Nate Coraor (nate@bx...
2
by John Chilton-4
job not starting on cluster by Langhorst, Brad
1
by John Chilton-4
PHYLIP by philippe
0
by philippe
cufflinks suite 2.2.1 by Geert Vandeweyer-4
1
by Björn Grüning-3
start and end times? by Evan Bollig PhD
3
by Dannon Baker-2
Re: "HTTPerror : HTTP error 307 : temporary redirect" by Perley, Danielle
0
by Perley, Danielle
Adding Reference Genomes, builds.txt vs manual_builds.txt by Lance Parsons
0
by Lance Parsons
XLS TO CSV by Mert Mehnur KIRKALI
4
by Peter Cock
creating datatype repository : no module named binary by Geert Vandeweyer-4
1
by Björn Grüning-3
Patch for libxslt and libxml packages by Jan Kanis
0
by Jan Kanis
August 2014 Galaxy Newsletter by Dave Clements-2
0
by Dave Clements-2
new_file_path questions by Geert Vandeweyer-4
1
by John Chilton-4
TestToolShed failure, Exception: History in error state. by Peter Cock
5
by John Chilton-4
bx version conflict causes failure for some tools (e.g. subtract interval tool) by Langhorst, Brad
0
by Langhorst, Brad
Error while installing tools from main toolshed: "HTTPerror : HTTP error 307 : temporary redirect" by Perley, Danielle
0
by Perley, Danielle
Toolshed tool_dependency.xml git archive configure issue by Dooley, Damion
5
by Dooley, Damion
galaxy install nginx by ngsflow@hygenomics.c...
1
by Langhorst, Brad
Announcement: Galaxy IPython Integration - interactive programming in Galaxy by Björn Grüning-3
0
by Björn Grüning-3
package_r_2_11_0 and ggplot2 by Evan Bollig PhD
6
by Evan Bollig PhD
fastq-mcf parameter bug by Michael Mason
0
by Michael Mason
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