Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
XLS TO CSV by Mert Mehnur KIRKALI
4
by Peter Cock
creating datatype repository : no module named binary by Geert Vandeweyer-4
1
by Björn Grüning-3
Patch for libxslt and libxml packages by Jan Kanis
0
by Jan Kanis
August 2014 Galaxy Newsletter by Dave Clements-2
0
by Dave Clements-2
new_file_path questions by Geert Vandeweyer-4
1
by John Chilton-4
TestToolShed failure, Exception: History in error state. by Peter Cock
5
by John Chilton-4
bx version conflict causes failure for some tools (e.g. subtract interval tool) by Langhorst, Brad
0
by Langhorst, Brad
Error while installing tools from main toolshed: "HTTPerror : HTTP error 307 : temporary redirect" by Perley, Danielle
0
by Perley, Danielle
Toolshed tool_dependency.xml git archive configure issue by Dooley, Damion
5
by Dooley, Damion
galaxy install nginx by ngsflow@hygenomics.c...
1
by Langhorst, Brad
Announcement: Galaxy IPython Integration - interactive programming in Galaxy by Björn Grüning-3
0
by Björn Grüning-3
package_r_2_11_0 and ggplot2 by Evan Bollig PhD
6
by Evan Bollig PhD
fastq-mcf parameter bug by Michael Mason
0
by Michael Mason
Secure Passwords by SHAUN WEBB
1
by John Chilton-4
How can I populate a data_collection output ? by juliech
4
by John Chilton-4
Uploads with embedded citations causing red error on Tool Shed by Peter Cock
6
by Peter Cock
change in file of Galaxy version by yassine
0
by yassine
Main Galaxy Tool Shed is running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Re: Error while installing DESeq-hts by Geert Vandeweyer-4
2
by Vipin TS
galaxy won't start by bflogalaxy
2
by bflogalaxy
is there an issue with displaying txt files in latest galaxy? by Geert Vandeweyer-4
1
by Geert Vandeweyer-4
Settings multiple Genome Indices by Geert Vandeweyer-4
5
by Geert Vandeweyer-4
GATK problem on Galaxy by Jingchao
0
by Jingchao
Jobs stay queued by juliech
7
by juliech
tool xml substitutes special characters in text parameter by Wolfgang Maier
4
by Wolfgang Maier
Menu label in toolshed by Yec'han Laizet
0
by Yec'han Laizet
Error Setting Up Local Galaxy Server by changk16
1
by Ross-2
P- Galaxy error by lakshmi krishnakumaa...
0
by lakshmi krishnakumaa...
sqlite galaxy datatype metadata by Jim Johnson-3
1
by iracooke
Send me your Visualizations by Aysam Guerler
0
by Aysam Guerler
Run Jobs as Real User - How to Configure it for TORQUE by Ping
4
by Ping
Local deployments of galaxy by Lapointe, David
2
by Hans-Rudolf Hotz
handlers by Shrum, Donald C
2
by Nate Coraor (nate@bx...
bioblend problem trying to use run_tool function by Olivia Doppelt
10
by John Chilton-4
How to configure galaxy with a cluster by 王渭巍
12
by Nate Coraor (nate@bx...
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