Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
API v/s twill based testing by saketkc
6
by Peter Cock
Unable to update to latest version of galaxy by Eleanor Morgan
3
by Eleanor Morgan
cleanup_datasets.py not deleting files... by burdettn
6
by burdettn
Wiki datatypes tutorial by Eric Rasche
1
by Peter Cock
Toolshed : tool_dependency xml, action problem by Nicolas Lapalu
5
by Greg Von Kuster
Fresh galaxy install fails to start by Iry Witham
0
by Iry Witham
Multiple output tools in Workflow by Calogero Zarbo
5
by Peter Cock
Workflow with many inputs by Alexandre
2
by Alexandre
Download URL needs user to be logged in first by burdettn
3
by Kandalaft, Iyad
Updated Freebayes Wrapper - Bugs by Lance Parsons
2
by Nicola Soranzo
Galaxy error by Beck, Emily A
0
by Beck, Emily A
Uploading Multiple files by burdettn
1
by John Chilton-4
Re: Toolshed roadmap by Greg Von Kuster
2
by Greg Von Kuster
Tool dependency environments with functional tests by Aaron Petkau
1
by Aaron Petkau
adding javascript based tool in local instance of Galaxy by Shyamasree Saha
1
by Carl Eberhard
Swiss-German Galaxy Tour: Sep 30th to Oct 2nd - Training day - Workshop - Developers day by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
slurm drmaa and main galaxy by Jillian Rowe
0
by Jillian Rowe
Clonable Galaxy installation by Srinivas .
3
by Björn Grüning-3
removing wrapper version info from tools? by Nikhil Joshi-2
4
by Björn Grüning-3
about parallel computing by xunyao@gmail.com
0
by xunyao@gmail.com
Uploading files by Matthew Birnie
2
by Aysam Guerler
moving tool-data : no build genome retrieve by juliech
1
by Daniel Blankenberg
Bug with workflow by juliech
5
by Nate Coraor (nate@bx...
ImportError: No module named galaxy_utils.sequence.fastq by juliech
5
by John Chilton-4
Question: Problems on Running Functional Tests on an External Instance of Galaxy by speillet
2
by John Chilton-4
Escaped text from input fields by Renato Alves
1
by Peter Cock
Job execution order mixed-up by Jean-Francois Payott...
7
by Kandalaft, Iyad
Run a tool's workflow one by one ? by Pat-74100
11
by Dannon Baker-2
Re: repeat tag enhancement? by Jens
3
by Jens
Galaxy/ODoSE - Output accessory orthologous genes ERROR by Sérgio Miguel Marcel...
0
by Sérgio Miguel Marcel...
Sort error while running Cuffdiff by TD
1
by Johnson, Nathan T. (...
Tophat for illumina reference genome by Findlay Bewicke-Copl...
0
by Findlay Bewicke-Copl...
How to access session cookies from within Galaxy tools? by Melissa Cline
0
by Melissa Cline
Per-tool configuration by Jan Kanis
13
by John Chilton-4
fix for GATK2 wrapper from IUC by Geert Vandeweyer-4
1
by Nicola Soranzo
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