Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Bug with workflow by juliech
5
by Nate Coraor (nate@bx...
ImportError: No module named galaxy_utils.sequence.fastq by juliech
5
by John Chilton-4
Question: Problems on Running Functional Tests on an External Instance of Galaxy by speillet
2
by John Chilton-4
Escaped text from input fields by Renato Alves
1
by Peter Cock
Job execution order mixed-up by Jean-Francois Payott...
7
by Kandalaft, Iyad
Run a tool's workflow one by one ? by Pat-74100
11
by Dannon Baker-2
Re: repeat tag enhancement? by Jens
3
by Jens
Galaxy/ODoSE - Output accessory orthologous genes ERROR by Sérgio Miguel Marcel...
0
by Sérgio Miguel Marcel...
Sort error while running Cuffdiff by TD
1
by Johnson, Nathan T. (...
Tophat for illumina reference genome by Findlay Bewicke-Copl...
0
by Findlay Bewicke-Copl...
How to access session cookies from within Galaxy tools? by Melissa Cline
0
by Melissa Cline
Per-tool configuration by Jan Kanis
13
by John Chilton-4
fix for GATK2 wrapper from IUC by Geert Vandeweyer-4
1
by Nicola Soranzo
setup_venv doesn't honour set_environment_for_install / installing lxml by Jan Kanis
4
by Jan Kanis
Updated Freebayes Wrapper (0.9.14) - Bug Report by Lance Parsons
0
by Lance Parsons
Galaxy mobile site by MF Rogers
2
by MF Rogers
Missing 'shared data' library by Anna Bruniche-Olsen
0
by Anna Bruniche-Olsen
job_working_directory by Shrum, Donald C
1
by John Chilton-4
Proposed cd-hit tool dependency change in galaxy by Qi, Chuyang
1
by Björn Grüning-3
Upload files to a data library - Invalid Paths by Dooley, Damion
2
by Dooley, Damion
How does Galaxy differentiate users who have not logged on? by Melissa Cline
3
by Daniel Blankenberg
Unable to finish job - metadata settings by Preussner, Jens
1
by John Chilton-4
Galaxy Tool Wrapper/DTD/Schema Needed by Jones, Tyler William
1
by Ross-2
Control on versioning in toolshed tools by Eric Kuyt
3
by Eric Kuyt
Difficulties wrapping r script with r_wrapper.sh by Jeremy Liu
1
by Ross-2
tool_data_table_conf.xml entries for migrated tools by Lance Parsons
0
by Lance Parsons
submit() gets blocked when running workflows via API by Carlos del Ojo
3
by Carlos del Ojo
deseq_hts problems by bravobih
0
by bravobih
interpreter option for version_command tag by Will Holtz
2
by John Chilton-4
Announcement: Galaxy Docker builds by Björn Grüning-3
2
by Björn Grüning-3
Can' Start the Galaxy instance! by xlwang
2
by Dannon Baker-2
BEDtools wrapper development - help needed by Björn Grüning-3
0
by Björn Grüning-3
specifying default file by name in workflows by Evan Bollig PhD
2
by Peter Cock
Import of Capsules failing on local toolshed instance by Will Holtz
4
by Greg Von Kuster
Postgresql database time wrong... by burdettn
3
by Will Holtz
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