Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Error with fastx reverse compliment by UMD Bioinformatics
0
by UMD Bioinformatics
jobs submitted to a cluster by Shrum, Donald C
5
by Shrum, Donald C
Toolshed upload error message by Vipin TS
3
by Dave Bouvier
Galaxy updated botched? by Kandalaft, Iyad
9
by Kandalaft, Iyad
Cannot find 'Export this revision' option on main or test toolsheds by Will Holtz
1
by Dave Bouvier
sorting of files in data libraries by Sarah Diehl-2
1
by Jennifer Jackson
Join Paired-End reads (version 1.0.3) by Julien Daligault
1
by Jennifer Jackson
SAM/BAM To Counts dataset generation errors by bravobih
1
by Jennifer Jackson
input file empty by Sofie THIJS
1
by Jennifer Jackson
upload problems by Shrum, Donald C
5
by Shrum, Donald C
Setting multiple parameters for a workflow (API) by Carlos del Ojo
1
by John Chilton-4
Non-admin tool install/import by karthikg
5
by karthikg
inconsistent use of tempfile.mkstemp during upload causes problems by John-Paul Robinson
6
by John Chilton-4
Toolshed update list? by Eric Rasche
1
by Greg Von Kuster
Tracking tool execution time? by Jim McCusker
1
by Peter Cock
ClustalW jobs aren't working by Malcolm Tobias
8
by Malcolm Tobias
installing htseq-count from tool-shed by karenchait
2
by Lance Parsons
"Resume Paused Jobs" by Björn Grüning-3
2
by Björn Grüning-3
Docker based tools by Kyle Ellrott
2
by John Chilton-4
Are there examples of tools that run processes in the background? by Melissa Cline
1
by Ross-2
to put or not to put a tool suite into the toolshed by Wolfgang Maier
3
by Wolfgang Maier
ToolShed for Visualisation Registry? by saketkc
1
by John Chilton-4
Re: to put or not to put a tool suite into the by Kandalaft, Iyad
0
by Kandalaft, Iyad
Installing galaxy with Apache by M_Enders
2
by M_Enders
galaxy is not sourcing tool environment by Isabelle Phan
2
by Isabelle Phan
Manual Tool and dependency installation by Ravi Alla
2
by Björn Grüning-3
tool dependencies fail by Isabelle Phan
7
by John Chilton-4
About GALAXY customisation by Patrick Tran Van
1
by Thomas Bellembois
Pre pull-request: CLI and hidden data by cganote@iu.edu
1
by John Chilton-4
2014 Galaxy Community Conference June 6 Registration Deadline (this Friday) by Dave Clements-2
0
by Dave Clements-2
Galaxy customized tool config file by Vipin TS
3
by Vipin TS
Move galaxy/database (SQLite) to a new location by burdettn
2
by Kandalaft, Iyad
Dataset_Collections : an example of code for a tool ? by juliech
2
by juliech
Bioblend dependency error by Nikos Sidiropoulos
5
by Dannon Baker-2
Dataset_Collections : an example of code for a tool ? by juliech
0
by juliech
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