Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
How Galaxy prevents security attacks? by burdettn
3
by Dannon Baker-2
Gzipped input to functional tests with multiple="true" by Peter Cock
1
by Peter Cock
What is the correct place under Galaxy for a database that's created by a tool? by Melissa Cline
5
by Melissa Cline
R bioconductor dependencies when creating toolshed installation by Stef van Lieshout
7
by Stef van Lieshout
R version 3.1.0 by Stef van Lieshout
0
by Stef van Lieshout
Using Mesos to Enable distributed computing under Galaxy? by Kyle Ellrott
8
by Kyle Ellrott
Can't startup the galaxy-central instance! by xlwang
0
by xlwang
troubleshooting Galaxy with LSF by I Kozin
11
by INKozin
Missing navigation pane by Stephen E
5
by Daniel Blankenberg
Tools for managing installed toolshed tools? by Eric Rasche
0
by Eric Rasche
multiple file selection for from_file by Jun Fan
1
by Daniel Blankenberg
Re: galaxy-dev Digest, Vol 96, Issue 14 by xlwang
1
by Dannon Baker-2
Browsing toolsheds - HTTP(s) and firewalls by Eric Rasche
0
by Eric Rasche
Error with fastx reverse compliment by UMD Bioinformatics
0
by UMD Bioinformatics
jobs submitted to a cluster by Shrum, Donald C
5
by Shrum, Donald C
Toolshed upload error message by Vipin TS
3
by Dave Bouvier
Galaxy updated botched? by Kandalaft, Iyad
9
by Kandalaft, Iyad
Cannot find 'Export this revision' option on main or test toolsheds by Will Holtz
1
by Dave Bouvier
sorting of files in data libraries by Sarah Diehl-2
1
by Jennifer Jackson
Join Paired-End reads (version 1.0.3) by Julien Daligault
1
by Jennifer Jackson
SAM/BAM To Counts dataset generation errors by bravobih
1
by Jennifer Jackson
input file empty by Sofie THIJS
1
by Jennifer Jackson
upload problems by Shrum, Donald C
5
by Shrum, Donald C
Setting multiple parameters for a workflow (API) by Carlos del Ojo
1
by John Chilton-4
Non-admin tool install/import by karthikg
5
by karthikg
inconsistent use of tempfile.mkstemp during upload causes problems by John-Paul Robinson
6
by John Chilton-4
Toolshed update list? by Eric Rasche
1
by Greg Von Kuster
Tracking tool execution time? by Jim McCusker
1
by Peter Cock
ClustalW jobs aren't working by Malcolm Tobias
8
by Malcolm Tobias
installing htseq-count from tool-shed by karenchait
2
by Lance Parsons
"Resume Paused Jobs" by Björn Grüning-3
2
by Björn Grüning-3
Docker based tools by Kyle Ellrott
2
by John Chilton-4
Are there examples of tools that run processes in the background? by Melissa Cline
1
by Ross-2
to put or not to put a tool suite into the toolshed by Wolfgang Maier
3
by Wolfgang Maier
ToolShed for Visualisation Registry? by saketkc
1
by John Chilton-4
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