Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
devteam packages by Jan Kanis
2
by Greg Von Kuster
Galaxy reports crashing with the latest stable release by Björn Grüning-3
2
by Björn Grüning-3
gatk2 wrapper issue by Geert Vandeweyer-4
1
by Greg Von Kuster
devteam GATK v1.4 toolshed wrapper depends on java 7 by Geert Vandeweyer-4
0
by Geert Vandeweyer-4
Fwd: Re: Move galaxy/database (SQLite) to a new location by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
jobs don't get killed when histories deleted by Jun Fan
0
by Jun Fan
empty history pane after upgrade to latest version by Geert Vandeweyer-4
0
by Geert Vandeweyer-4
visulaization of tree produced by raxml by philippe
0
by philippe
June 2, 2014 Galaxy Distribution by Jennifer Jackson
0
by Jennifer Jackson
Unable to access admin after install EMBOSS 5 from galaxy test repo by Cristian Alejandro R...
1
by Greg Von Kuster
Uploading files to galaxy from a folder by Kandalaft, Iyad
5
by Curtis Hendrickeduso...
Re: galaxy-dev Digest, Vol 96, Issue 1 by Kandalaft, Iyad
0
by Kandalaft, Iyad
New tool on TestToolShed still not tested by Peter Cock
3
by Dave Bouvier
Cluster Admins - Call for experiences/issues encountered by Eric Rasche
3
by Björn Grüning-3
stdout in history by burdettn
5
by Daniel Blankenberg
June 2014 Galaxy Update Newsletter: GCC2014 registration closes in 1 week! by Dave Clements-2
0
by Dave Clements-2
Data Libraries are slow by Kandalaft, Iyad
1
by Dannon Baker-2
Old Tool Shed URL http://community.g2.bx.psu.edu/ dead by Peter Cock
6
by Nate Coraor (nate@bx...
Changes in admin menu - Upload files by Julien Daligault
3
by Kandalaft, Iyad
Re: Problem using Galaxy with a PostgreSQL database on a remote host (Dannon Baker) by Kandalaft, Iyad
1
by Paniagua, Eric
complex help for conditional param by Jun Fan
3
by Peter Cock
RFC: Citations for tools by Eric Rasche
11
by Hans-Rudolf Hotz
Problem using Galaxy with a PostgreSQL database on a remote host by Paniagua, Eric
8
by Paniagua, Eric
ToolShed: Uploaded archives can only include regular directories and files by Peter Cock
2
by Peter Cock
Installation failure on Test Tool Shed by Peter Cock
3
by Greg Von Kuster
Main ToolShed wrong report: Repository does not have a test-data directory. by Peter Cock
1
by Greg Von Kuster
Galaxy queue by burdettn
3
by burdettn
uninstalling tools via web api by Evan Bollig PhD
3
by Greg Von Kuster
new_tool_panel_section_label web api by Evan Bollig PhD
1
by Greg Von Kuster
Display problem with partial loading of tabular data by Peter Cock
2
by Peter Cock
Repository installation on multiple servers by Kandalaft, Iyad
5
by Langhorst, Brad
dynamic number of outputs in workflow context by Jun Fan
1
by John Chilton-4
download workflow error by Evan Bollig PhD
1
by Dannon Baker-2
Galaxy is not running by Wally Atterberry
0
by Wally Atterberry
TestToolShed NameError: global name 'suc' is not defined by Peter Cock
2
by Peter Cock
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