Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Re: to put or not to put a tool suite into the by Kandalaft, Iyad
0
by Kandalaft, Iyad
Installing galaxy with Apache by M_Enders
2
by M_Enders
galaxy is not sourcing tool environment by Isabelle Phan
2
by Isabelle Phan
Manual Tool and dependency installation by Ravi Alla
2
by Björn Grüning-3
tool dependencies fail by Isabelle Phan
7
by John Chilton-4
About GALAXY customisation by Patrick Tran Van
1
by Thomas Bellembois
Pre pull-request: CLI and hidden data by cganote@iu.edu
1
by John Chilton-4
2014 Galaxy Community Conference June 6 Registration Deadline (this Friday) by Dave Clements-2
0
by Dave Clements-2
Galaxy customized tool config file by Vipin TS
3
by Vipin TS
Move galaxy/database (SQLite) to a new location by burdettn
2
by Kandalaft, Iyad
Dataset_Collections : an example of code for a tool ? by juliech
2
by juliech
Bioblend dependency error by Nikos Sidiropoulos
5
by Dannon Baker-2
Dataset_Collections : an example of code for a tool ? by juliech
0
by juliech
devteam packages by Jan Kanis
2
by Greg Von Kuster
Galaxy reports crashing with the latest stable release by Björn Grüning-3
2
by Björn Grüning-3
gatk2 wrapper issue by Geert Vandeweyer-4
1
by Greg Von Kuster
devteam GATK v1.4 toolshed wrapper depends on java 7 by Geert Vandeweyer-4
0
by Geert Vandeweyer-4
Fwd: Re: Move galaxy/database (SQLite) to a new location by Hans-Rudolf Hotz
0
by Hans-Rudolf Hotz
jobs don't get killed when histories deleted by Jun Fan
0
by Jun Fan
empty history pane after upgrade to latest version by Geert Vandeweyer-4
0
by Geert Vandeweyer-4
visulaization of tree produced by raxml by philippe
0
by philippe
June 2, 2014 Galaxy Distribution by Jennifer Jackson
0
by Jennifer Jackson
Unable to access admin after install EMBOSS 5 from galaxy test repo by Cristian Alejandro R...
1
by Greg Von Kuster
Uploading files to galaxy from a folder by Kandalaft, Iyad
5
by Curtis Hendrickeduso...
Re: galaxy-dev Digest, Vol 96, Issue 1 by Kandalaft, Iyad
0
by Kandalaft, Iyad
New tool on TestToolShed still not tested by Peter Cock
3
by Dave Bouvier
Cluster Admins - Call for experiences/issues encountered by Eric Rasche
3
by Björn Grüning-3
stdout in history by burdettn
5
by Daniel Blankenberg
June 2014 Galaxy Update Newsletter: GCC2014 registration closes in 1 week! by Dave Clements-2
0
by Dave Clements-2
Data Libraries are slow by Kandalaft, Iyad
1
by Dannon Baker-2
Old Tool Shed URL http://community.g2.bx.psu.edu/ dead by Peter Cock
6
by Nate Coraor (nate@bx...
Changes in admin menu - Upload files by Julien Daligault
3
by Kandalaft, Iyad
Re: Problem using Galaxy with a PostgreSQL database on a remote host (Dannon Baker) by Kandalaft, Iyad
1
by Paniagua, Eric
complex help for conditional param by Jun Fan
3
by Peter Cock
RFC: Citations for tools by Eric Rasche
11
by Hans-Rudolf Hotz
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