Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
warning text by Evan Bollig PhD
1
by Dannon Baker-2
Fwd: Fwd: genotypeGVCFs in galaxy from GATK 3.0 by florian
0
by florian
genotypeGVCFs in galaxy from GATK 3.0 by Nikhil Joshi-2
1
by Björn Grüning-3
tool_shed_install.xml by Evan Bollig PhD
2
by Evan Bollig PhD
workflow delete cancelled but workflows are still deleted by Evan Bollig PhD
1
by John Chilton-4
How to save job details outside of Galaxy by G.Penderia
1
by John Chilton-4
error: flexbar dependency is not installed by the toolshed by Rui Wang
1
by Greg Von Kuster
Redirecting page after tool completes by burdettn
2
by burdettn
The main Tool Shed is now tracking the next-stable branch in preparation for the upcoming Galaxy release by Greg Von Kuster
0
by Greg Von Kuster
GCC2014 Early Registration closes this Friday, May 23 by Dave Clements-2
0
by Dave Clements-2
InvalidVersionError: 103 is not 105 by Evan Bollig PhD
4
by Dannon Baker-2
user specific access/options by Jennifer Jackson
2
by Hans-Rudolf Hotz
Get the user credentials from the tool. by Dmitry
4
by Dmitry
replacing XML fragments in mycustomtool.xml by Pierre Lindenbaum
1
by Peter Cock
monitoring jobs start time by burdettn
1
by Nicola Soranzo
nginx configuration question by Rui Wang
3
by Rui Wang
New tool listed under "Latest revision: failing tool tests" yet not tested by Peter Cock
2
by Peter Cock
$GALAXY_SLOTS is set incorrectly when using LSF by hackdna
1
by John Chilton-4
User information when creating a new user by burdettn
1
by Nate Coraor (nate@bx...
Upload a file by def87
3
by John Chilton-4
Conditional parameters don't work with radio display by Peter Cock
3
by Peter Cock
reports page download by burdettn
1
by Hans-Rudolf Hotz
external chown does not chown multiple outputs .files_path by Pavel Fibich
2
by Pavel Fibich
Default value for data_column not working? by Peter Cock
9
by Peter Cock
Genomespace Integration with workflows by Nuwan Goonasekera
0
by Nuwan Goonasekera
backtrace from set_dataset_sizes.py by Langhorst, Brad
0
by Langhorst, Brad
Keeping a tool from running multiple times at once by G.Penderia
3
by G.Penderia
user account activation by Jun Fan
2
by Jun Fan
history item status not updating by Robert Baertsch-2
3
by John Chilton-4
apache setting by Jun Fan
3
by cjav
[GSoC2013] Nested Workflows for Galaxy by saketkc
0
by saketkc
Inform tool interface with data specific to selected dataset by Eric Rasche
5
by Dooley, Damion
Taking backups of my galaxy instance by Nilaksha Neththikuma...
1
by Hans-Rudolf Hotz
identify tool based on qstat name. by Geert Vandeweyer-4
1
by Björn Grüning-3
Restarting toolshed when "run_tool_Shed.sh --daemon stop" doesn't work by Dooley, Damion
0
by Dooley, Damion
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