Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
external chown does not chown multiple outputs .files_path by Pavel Fibich
2
by Pavel Fibich
Default value for data_column not working? by Peter Cock
9
by Peter Cock
Genomespace Integration with workflows by Nuwan Goonasekera
0
by Nuwan Goonasekera
backtrace from set_dataset_sizes.py by Langhorst, Brad
0
by Langhorst, Brad
Keeping a tool from running multiple times at once by G.Penderia
3
by G.Penderia
user account activation by Jun Fan
2
by Jun Fan
history item status not updating by Robert Baertsch-2
3
by John Chilton-4
apache setting by Jun Fan
3
by cjav
[GSoC2013] Nested Workflows for Galaxy by saketkc
0
by saketkc
Inform tool interface with data specific to selected dataset by Eric Rasche
5
by Dooley, Damion
Taking backups of my galaxy instance by Nilaksha Neththikuma...
1
by Hans-Rudolf Hotz
identify tool based on qstat name. by Geert Vandeweyer-4
1
by Björn Grüning-3
Restarting toolshed when "run_tool_Shed.sh --daemon stop" doesn't work by Dooley, Damion
0
by Dooley, Damion
Re: Missing module in the lwr repository by John Chilton-4
0
by John Chilton-4
user information form by Sarah Diehl-2
0
by Sarah Diehl-2
xml file display problem by Hans-Rudolf Hotz
2
by Hans-Rudolf Hotz
galaxy on ubuntu 14.04: hangs on metadata cleanup by Jorrit Boekel
2
by Jorrit Boekel
Correct toolshed tool config for a .loc file by Dooley, Damion
3
by Dooley, Damion
setup_virtualenv action doesn't update PATH by Rodrigo García Herre...
0
by Rodrigo García Herre...
drmaa by Shrum, Donald C
1
by Nate Coraor (nate@bx...
Bam upload fails: samtools not found by Geert Vandeweyer-4
2
by Geert Vandeweyer-4
Uploading big data in local installation of galaxy by Jennifer Jackson
0
by Jennifer Jackson
permanently deleting histories by Jennifer Gotenstein
1
by Jennifer Jackson
Portability and versionig in Galaxy by Golestan (Sally) Rad...
1
by Jennifer Jackson
Cannot access saved history nor saved datasets by Joshua David Aaker
1
by Jennifer Jackson
Galaxy REST API: multiple params per tool by Jim McCusker
1
by Jim McCusker
Missing pyyaml - raise DistributionNotFound(req) # XXX put more info here by Peter Cock
8
by Dannon Baker-2
File upload error by Heller Gerwin
1
by Dannon Baker-2
specify file_path for each Galaxy registered users by shenwiyn
1
by Dannon Baker-2
display_at_callback by David Hoover
0
by David Hoover
Cleanest way to disable job-runs during a long cluster maintenace window? by Curtis Hendrickeduso...
3
by Björn Grüning-3
Globus tools for galaxy by David Hoover
0
by David Hoover
Help with cluster setup by Jurgens
8
by Nate Coraor (nate@bx...
Galaxy Error Message by Bradley Belfiore
18
by Bradley Belfiore
purging deleted datasets by Milad Bastami
4
by Nate Coraor (nate@bx...
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