Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
Problem with the "set_library_permissions" function on bioblend by Kevin Muret
4
by John Chilton-4
May 2014 Galaxy News Update by Dave Clements-2
0
by Dave Clements-2
Test ToolShed package_samtools_0_1_19 status error? by Peter Cock
8
by Björn Grüning-3
disk space error by Jess Gaunt
3
by Dannon Baker-2
Error with "get data" function by DELRIEU Noemie
3
by Martin Čech
an uploading problem by Dana Avrahami-Tzfati
2
by Martin Čech
NGS Analyses in Galaxy by Joseph Guan Chong Ye...
2
by Martin Čech
Cloudman/Galaxy autoscaling by Jim McCusker
5
by Dannon Baker-2
workflow_execute_parameters.py by Olivia Doppelt
4
by Olivia Doppelt
tool form in remote mode by Yanbo Ye
0
by Yanbo Ye
user account by Jun Fan
7
by Martin Čech
how to edit the workflow (the connection between Select Variants and SnpEff) by Wang, Xiaofei
3
by John Chilton-4
Limits for enumerate for multiple input files by Ulf
4
by John Chilton-4
"Intersect multiple sorted BED files" / tool-data/shared/ucsc/chrom/genome_test.len) could not be opened by Jennifer Jackson
3
by Jennifer Jackson
problem with output file by clement_lionnet
1
by John Chilton-4
DRMAA configuring issue by Hakeem Almabrazi
2
by John Chilton-4
Character encoding on the command line by Jim McCusker
0
by Jim McCusker
Galaxy/Cloudman Compute Nodes User by Jim McCusker
3
by Jim McCusker
A proposed modules extension for toolshed wrappers by Guest, Simon
10
by John Chilton-4
AWS CloudFormation for Galaxy ? by Luca Toldo
1
by Enis Afgan-2
Galaxy - Cloudman by Jennifer Jackson
3
by Dannon Baker-2
show pie of html output krona (in eye mode) by clement_lionnet
1
by Stef van Lieshout
the dataset update time by Sanka, Ravi
0
by Sanka, Ravi
cleaning up job_working_directory by Sanka, Ravi
0
by Sanka, Ravi
errors with startup of galaxy server by Tony Kusalik
1
by Martin Čech
Re: Help Galaxy by Enis Afgan-2
2
by yattara Moussa
(New) error in Galaxy Reports by Nikos Sidiropoulos
1
by Nikos Sidiropoulos
Specifying _JAVA_OPTIONS in job_conf.xml by Björn Grüning-3
6
by John Chilton-4
Announcing the Galaxy Biostar Forum by Jennifer Jackson
0
by Jennifer Jackson
Announcing the Galaxy Biostar Forum by Jennifer Jackson
0
by Jennifer Jackson
FTP page not viewable. by Timothy Carr
1
by Aysam Guerler
problem with bioc_qvalue, Version: 1.34.0 by Tony Kusalik
4
by Greg Von Kuster
registration problem by igelkott
2
by Jennifer Jackson
double check for "EMS Variant Density Mapping" by Wang, Xiaofei
0
by Wang, Xiaofei
(OperationalError) no such column: history_dataset_association.extended_metadata_id by Peter Cock
6
by Dannon Baker-2
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