Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
"Intersect multiple sorted BED files" / tool-data/shared/ucsc/chrom/genome_test.len) could not be opened by Jennifer Jackson
3
by Jennifer Jackson
problem with output file by clement_lionnet
1
by John Chilton-4
DRMAA configuring issue by Hakeem Almabrazi
2
by John Chilton-4
Character encoding on the command line by Jim McCusker
0
by Jim McCusker
Galaxy/Cloudman Compute Nodes User by Jim McCusker
3
by Jim McCusker
A proposed modules extension for toolshed wrappers by Guest, Simon
10
by John Chilton-4
AWS CloudFormation for Galaxy ? by Luca Toldo
1
by Enis Afgan-2
Galaxy - Cloudman by Jennifer Jackson
3
by Dannon Baker-2
show pie of html output krona (in eye mode) by clement_lionnet
1
by Stef van Lieshout
the dataset update time by Sanka, Ravi
0
by Sanka, Ravi
cleaning up job_working_directory by Sanka, Ravi
0
by Sanka, Ravi
errors with startup of galaxy server by Tony Kusalik
1
by Martin Čech
Re: Help Galaxy by Enis Afgan-2
2
by yattara Moussa
(New) error in Galaxy Reports by Nikos Sidiropoulos
1
by Nikos Sidiropoulos
Specifying _JAVA_OPTIONS in job_conf.xml by Björn Grüning-3
6
by John Chilton-4
Announcing the Galaxy Biostar Forum by Jennifer Jackson
0
by Jennifer Jackson
Announcing the Galaxy Biostar Forum by Jennifer Jackson
0
by Jennifer Jackson
FTP page not viewable. by Timothy Carr
1
by Aysam Guerler
problem with bioc_qvalue, Version: 1.34.0 by Tony Kusalik
4
by Greg Von Kuster
registration problem by igelkott
2
by Jennifer Jackson
double check for "EMS Variant Density Mapping" by Wang, Xiaofei
0
by Wang, Xiaofei
(OperationalError) no such column: history_dataset_association.extended_metadata_id by Peter Cock
6
by Dannon Baker-2
automatically adding fasta files to "built-in" databases and selecting files questions by Nikhil Joshi-2
2
by Hans-Rudolf Hotz
Migrate user data to a new server by Simon Gladman
3
by Derek Benson
uploading data libraries options by Mark
2
by Mark
Huttenhower Galaxy bug by Erin McKenney
0
by Erin McKenney
GCC2014 Poster Abstracts due April 25, THIS FRIDAY by Dave Clements-2
0
by Dave Clements-2
Trackster : Error visualising VCF by saketkc
1
by Jeremy Goecks-4
bug_losing_links_box by Mélanie Hachet
1
by John Chilton-4
Functional Tests and ftype by saketkc
20
by Peter Cock
User usage stats in local instance by abarrera
2
by abarrera
Galaxy Hackathon at GCC2014 by Dannon Baker-2
0
by Dannon Baker-2
User usage stats in local instance by abarrera
1
by Martin Čech
Re: galaxy-dev Digest, Vol 94, Issue 22 by Dooley, Damion
1
by John Chilton-4
problem with bioc_qvalue, Version: 1.34.0 by Tony Kusalik
0
by Tony Kusalik
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