Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Error getting Detrprok_wf working on local Galaxy instance by Bernardo Bello
1
by Bernardo Bello
Installing S-Mart on Mac OSX local instance (updated) by Bernardo Bello
2
by Bernardo Bello
Data Tables and *.loc files: Using named columns versus from_data_table by Peter Cock
2
by Peter Cock
visualization button by philippe
5
by Hans-Rudolf Hotz
Package/Module RPY by Hayes, Curt
7
by Greg Von Kuster
Check file before uploading by burdettn
1
by John Chilton-4
Installing S-Mart on Mac SOX local instance by Bernardo Bello
0
by Bernardo Bello
krona to metaphlan patch by Langhorst, Brad
1
by Dannon Baker-2
extract_genomic_dna.py by Adhemar
1
by Jennifer Jackson
Problem with executing newly installed tools (via admin) by Nicolas Cybulski
0
by Nicolas Cybulski
patches to bjorn's bismark wrapper by Langhorst, Brad
1
by Björn Grüning-3
Securing REMOTE_USER against local users by Eric Rasche
0
by Eric Rasche
authorize non admin user to only link a directory of files by Thomas
2
by Thomas
Data manager for the BLAST database *.loc files? by Peter Cock
2
by Peter Cock
Unable to remove old datasets by Sanka, Ravi
15
by Sanka, Ravi
Fwd: [galaxy-user] known name outputs shown in /database/files but not in galaxy windows by ANGELICA GOMEZ ROIG
3
by ANGELICA GOMEZ ROIG
The PBS job did not stop after the running dataset was deleted by Jian-Long Huang
1
by John Chilton-4
Stopping Upload jobs by cganote@iu.edu
1
by John Chilton-4
Access a tool inside another tool by Janaki Rama Rao Goll...
0
by Janaki Rama Rao Goll...
This tool was disabled before the job completed. Please contact your Galaxy administrator. by Ravi Alla
2
by Ravi Alla
Galaxy packages for Bio-Linux - an update + Apache proxying by Tim Booth
7
by Nate Coraor (nate@bx...
Depth of Coverage (local galaxy __ CloudMap) by Wang, Xiaofei
1
by Nate Coraor (nate@bx...
version of SAM-to-BAM (CloudMap) by Wang, Xiaofei
2
by Wang, Xiaofei
Download workflow from main Galaxy by Wang, Xiaofei
2
by Wang, Xiaofei
Better descriptions in job history? by Smithies, Russell
3
by Todd Oakley
The main Galaxy Tool Shed is now running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Reg: Issue while adding simple repository dependencies for custom tool by Janaki Rama Rao Goll...
18
by Greg Von Kuster
Problem downloading large processed datasets : galaxy local instance by Nilaksha Neththikuma...
9
by Nilaksha Neththikuma...
(some) Tabular files not displaying correctly by Lukasse, Pieter
7
by Lukasse, Pieter
known name outputs shown in /database/files but not in galaxy windows by ANGELICA GOMEZ ROIG
1
by Jennifer Jackson
picard wrappers to support the rna-seq metrics and downsample sam tools? by Brad Zeitner
1
by Björn Grüning-3
Galaxy unhandled exception checking jobs error by Ravi Alla
4
by Ravi Alla
Problems submitting using PBS Pro 12.1 by Luca Toldo
7
by Nate Coraor (nate@bx...
Re: [galaxy-bugs] Galaxy modules deployment by Martin Čech
0
by Martin Čech
exported Workflows can contain full-path information by Björn Grüning-3
0
by Björn Grüning-3
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