Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
api dataset id problem by Pandorin
0
by Pandorin
Uploading a large number of files to a library creates duplicates by Yves Gagnon
0
by Yves Gagnon
understanding change of colours in history by burdettn
3
by John Chilton-4
Can a tool upload a .loc file that is then reused by subsequent versions of the tool? by Dooley, Damion
4
by Dooley, Damion
example_watch_folder.py problem importing file by Liisa Koski-2
0
by Liisa Koski-2
enforcing minimum length on text params by Sanka, Ravi
4
by Nicola Soranzo
LWR Support by Alexandre
1
by John Chilton-4
Launching a workflow via API, multiple params for one tool by John Eppley
3
by John Eppley
Bowse button on upload data tool page... by burdettn
1
by John Chilton-4
Using Galaxy ToolShed API for uploading a tar-ball by Peter Cock
1
by Greg Von Kuster
Jobs deleted staying in 'dr' status by Mathieu Bahin
3
by Nicola Soranzo
Error running workflow via API by John Eppley-2
2
by John Eppley
jobs stuck in new state by David Hoover
4
by Yves Gagnon
Error getting Detrprok_wf working on local Galaxy instance by Bernardo Bello
1
by Bernardo Bello
Installing S-Mart on Mac OSX local instance (updated) by Bernardo Bello
2
by Bernardo Bello
Data Tables and *.loc files: Using named columns versus from_data_table by Peter Cock
2
by Peter Cock
visualization button by philippe
5
by Hans-Rudolf Hotz
Package/Module RPY by Hayes, Curt
7
by Greg Von Kuster
Check file before uploading by burdettn
1
by John Chilton-4
Installing S-Mart on Mac SOX local instance by Bernardo Bello
0
by Bernardo Bello
krona to metaphlan patch by Langhorst, Brad
1
by Dannon Baker-2
extract_genomic_dna.py by Adhemar
1
by Jennifer Jackson
Problem with executing newly installed tools (via admin) by Nicolas Cybulski
0
by Nicolas Cybulski
patches to bjorn's bismark wrapper by Langhorst, Brad
1
by Björn Grüning-3
Securing REMOTE_USER against local users by Eric Rasche
0
by Eric Rasche
authorize non admin user to only link a directory of files by Thomas
2
by Thomas
Data manager for the BLAST database *.loc files? by Peter Cock
2
by Peter Cock
Unable to remove old datasets by Sanka, Ravi
15
by Sanka, Ravi
Fwd: [galaxy-user] known name outputs shown in /database/files but not in galaxy windows by ANGELICA GOMEZ ROIG
3
by ANGELICA GOMEZ ROIG
The PBS job did not stop after the running dataset was deleted by Jian-Long Huang
1
by John Chilton-4
Stopping Upload jobs by cganote@iu.edu
1
by John Chilton-4
Access a tool inside another tool by Janaki Rama Rao Goll...
0
by Janaki Rama Rao Goll...
This tool was disabled before the job completed. Please contact your Galaxy administrator. by Ravi Alla
2
by Ravi Alla
Galaxy packages for Bio-Linux - an update + Apache proxying by Tim Booth
7
by Nate Coraor (nate@bx...
Depth of Coverage (local galaxy __ CloudMap) by Wang, Xiaofei
1
by Nate Coraor (nate@bx...
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