Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
restarting multiple web workers by Langhorst, Brad
2
by Peter Briggs
Select Random Lines - Not Working by Unmesh Jadhav
0
by Unmesh Jadhav
ENA SRA data retrieval with Cloudman by Mohammad Heydarian
4
by Mohammad Heydarian
label element by Jun Fan
1
by John Chilton-4
snpEff and FASTQ Summary Statistics errors by Wang, Xiaofei
0
by Wang, Xiaofei
Problem with executing newly installed tools (via admin) by Nicolas Cybulski
0
by Nicolas Cybulski
Bowtie2 and tophat2 data library set up by huayan
5
by Martin Čech
Managing large database lists in tool wrappers? by Smithies, Russell
6
by Björn Grüning-3
compressed file datatype by Sanka, Ravi
0
by Sanka, Ravi
April 2014 Galaxy Update Newsletter: GCC2014 Talk Abstracts due this Friday by Dave Clements-2
0
by Dave Clements-2
Re: . Output file to history (Sebastian Luna Valero) by Jun Fan
2
by John Chilton-4
Debugging DRMAA interface: what to do when job by Luca Toldo
1
by Thomas Bellembois
trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7 by Shu-Yi Su
11
by Shu-Yi Su-2
Fetch Taxonomic Representation : Fails : terminated by signal11 by Nilaksha Neththikuma...
0
by Nilaksha Neththikuma...
homebrew python by bnapus
2
by Joshua Udall
ERROR executing tool by virginia dalla via
1
by Nate Coraor (nate@bx...
Forward of moderated message by galaxy-user-bounces
4
by Nate Coraor (nate@bx...
restarting Galaxy without affecting jobs by David Hoover
1
by Nate Coraor (nate@bx...
HELP: universe_wsgi.ini and job_conf.xml for installation using local and PBS pro cluster. by Luca Toldo
1
by Björn Grüning-3
Globus World 2014 by Ravi Madduri
0
by Ravi Madduri
tophat2 install by Briand, Sheldon
18
by Briand, Sheldon
minimus2 wrapper by Peter Cock
0
by Peter Cock
How to write test cases for custom tool by Janaki Rama Rao Goll...
8
by Janaki Rama Rao Goll...
Citing Galaxy + Toolshed in an app note of a small tool by Assaf Gordon-2
2
by Bossers, Alex
adding E.coli K-12 genome for mapping by tima
2
by tima
Galaxy startup takes very long. Normal? by Geert Vandeweyer-4
6
by Geert Vandeweyer-4
Errors loading data into IGV from Galaxy by Hillman, Paul R.
2
by Hillman, Paul R.
YAML Configuration, select specific file by Shane Kirk
0
by Shane Kirk
Recovery of lost DRMAA job? by Brian Claywell
0
by Brian Claywell
Dealing with qiime output by Ravi Alla
0
by Ravi Alla
GCC2014 Early Registration and Abstract Submission are now OPEN! by Dave Clements-2
1
by Dave Clements-2
create local galaxy in mac os by Chunjiang He
1
by Martin Čech
I can't impersonate an user by Perez, Ricardo
3
by Dannon Baker-2
Re: prims workflows by Greg Von Kuster
0
by Greg Von Kuster
tool_dependencies.xml Environmental Variable Question by Michael E. Cotterell
2
by Dave Bouvier
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