Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
version of SAM-to-BAM (CloudMap) by Wang, Xiaofei
2
by Wang, Xiaofei
Download workflow from main Galaxy by Wang, Xiaofei
2
by Wang, Xiaofei
Better descriptions in job history? by Smithies, Russell
3
by Todd Oakley
The main Galaxy Tool Shed is now running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Reg: Issue while adding simple repository dependencies for custom tool by Janaki Rama Rao Goll...
18
by Greg Von Kuster
Problem downloading large processed datasets : galaxy local instance by Nilaksha Neththikuma...
9
by Nilaksha Neththikuma...
(some) Tabular files not displaying correctly by Lukasse, Pieter
7
by Lukasse, Pieter
known name outputs shown in /database/files but not in galaxy windows by ANGELICA GOMEZ ROIG
1
by Jennifer Jackson
picard wrappers to support the rna-seq metrics and downsample sam tools? by Brad Zeitner
1
by Björn Grüning-3
Galaxy unhandled exception checking jobs error by Ravi Alla
4
by Ravi Alla
Problems submitting using PBS Pro 12.1 by Luca Toldo
7
by Nate Coraor (nate@bx...
Re: [galaxy-bugs] Galaxy modules deployment by Martin Čech
0
by Martin Čech
exported Workflows can contain full-path information by Björn Grüning-3
0
by Björn Grüning-3
restarting multiple web workers by Langhorst, Brad
2
by Peter Briggs
Select Random Lines - Not Working by Unmesh Jadhav
0
by Unmesh Jadhav
ENA SRA data retrieval with Cloudman by Mohammad Heydarian
4
by Mohammad Heydarian
label element by Jun Fan
1
by John Chilton-4
snpEff and FASTQ Summary Statistics errors by Wang, Xiaofei
0
by Wang, Xiaofei
Problem with executing newly installed tools (via admin) by Nicolas Cybulski
0
by Nicolas Cybulski
Bowtie2 and tophat2 data library set up by huayan
5
by Martin Čech
Managing large database lists in tool wrappers? by Smithies, Russell
6
by Björn Grüning-3
compressed file datatype by Sanka, Ravi
0
by Sanka, Ravi
April 2014 Galaxy Update Newsletter: GCC2014 Talk Abstracts due this Friday by Dave Clements-2
0
by Dave Clements-2
Re: . Output file to history (Sebastian Luna Valero) by Jun Fan
2
by John Chilton-4
Debugging DRMAA interface: what to do when job by Luca Toldo
1
by Thomas Bellembois
trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7 by Shu-Yi Su
11
by Shu-Yi Su-2
Fetch Taxonomic Representation : Fails : terminated by signal11 by Nilaksha Neththikuma...
0
by Nilaksha Neththikuma...
homebrew python by bnapus
2
by Joshua Udall
ERROR executing tool by virginia dalla via
1
by Nate Coraor (nate@bx...
Forward of moderated message by galaxy-user-bounces
4
by Nate Coraor (nate@bx...
restarting Galaxy without affecting jobs by David Hoover
1
by Nate Coraor (nate@bx...
HELP: universe_wsgi.ini and job_conf.xml for installation using local and PBS pro cluster. by Luca Toldo
1
by Björn Grüning-3
Globus World 2014 by Ravi Madduri
0
by Ravi Madduri
tophat2 install by Briand, Sheldon
18
by Briand, Sheldon
minimus2 wrapper by Peter Cock
0
by Peter Cock
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