Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
How to write test cases for custom tool by Janaki Rama Rao Goll...
8
by Janaki Rama Rao Goll...
Citing Galaxy + Toolshed in an app note of a small tool by Assaf Gordon-2
2
by Bossers, Alex
adding E.coli K-12 genome for mapping by tima
2
by tima
Galaxy startup takes very long. Normal? by Geert Vandeweyer-4
6
by Geert Vandeweyer-4
Errors loading data into IGV from Galaxy by Hillman, Paul R.
2
by Hillman, Paul R.
YAML Configuration, select specific file by Shane Kirk
0
by Shane Kirk
Recovery of lost DRMAA job? by Brian Claywell
0
by Brian Claywell
Dealing with qiime output by Ravi Alla
0
by Ravi Alla
GCC2014 Early Registration and Abstract Submission are now OPEN! by Dave Clements-2
1
by Dave Clements-2
create local galaxy in mac os by Chunjiang He
1
by Martin Čech
I can't impersonate an user by Perez, Ricardo
3
by Dannon Baker-2
Re: prims workflows by Greg Von Kuster
0
by Greg Von Kuster
tool_dependencies.xml Environmental Variable Question by Michael E. Cotterell
2
by Dave Bouvier
Finding cruft in database/files/? by Brian Claywell
4
by Peter Cock
Forward of moderated message by galaxy-user-bounces
1
by Janaki Rama Rao Goll...
Error running worflows from the ToolShed by Björn Grüning-3
2
by Björn Grüning-3
Suppress stdout in history item by Hans van Leeuwen
2
by Hans van Leeuwen
trackster problem for version-2014.02.10 by Shu-Yi Su
0
by Shu-Yi Su
migrate to postgresql by Jun Fan
2
by Jun Fan
Common workflow test tools by Ravi Alla
1
by Peter Cock
Output file to history by Jennifer Jackson
0
by Jennifer Jackson
blast+ wrapper with remote searching by Nilaksha Neththikuma...
6
by Peter Cock
Installing homer into galaxy by Peter Schmitt
3
by Greg Von Kuster
Adding a tool with additional html/js interface to make input selection by Saba Sehrish
14
by Saba Sehrish
Re: dynamic select problem by Saba Sehrish-2
3
by Saba Sehrish-2
Tool Testing Enhancements by John Chilton-4
3
by Peter Cock
REFERENCE genome in Bowtie2 by Emir Islamovic
0
by Emir Islamovic
Tool Shed install best practise : Precompiled binaries vs local compile by Peter Cock
4
by Björn Grüning-3
GATK 3.1 by Thomas
2
by Björn Grüning-3
UCSC Display problem by Peter Schmitt
8
by John Chilton-4
Persistent jobs in cluster queue even after canceling job in galaxy by Ravi Alla
9
by John Chilton-4
Verifying test output datatypes, was: Problem with <change_format> and conditional inputs? by Peter Cock
4
by John Chilton-4
BugFix for dynamic_options ParamValueFilter to run IUC SnpEff in a workflow by Jim Johnson-3
2
by Jim Johnson-3
Empty history pane by Liisa Koski-2
8
by Carl Eberhard
ToolSheds by César Acevedo
1
by Martin Čech
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