Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Quota History not getting purged by Alexander Kurze-2
3
by Peter Cock
Purging datasets as part of workflow? by Sveinung Gundersen
2
by John Chilton-4
Pick-you-own columns in BLAST+ tabular output by Peter Cock
3
by Peter Cock
tool_sheds_errors by Wang, Xiaofei
1
by Vipin TS
Local Galaxy web layout by shenwiyn
5
by Martin Čech
tool_dependency_dir (Installed, missing tool dependencies) by Wang, Xiaofei
3
by Wang, Xiaofei
installed bwa but there are no bwa files produced in galaxy-dist folder by Anna
0
by Anna
Re: Plugins by Michael E. Cotterell
4
by Carl Eberhard
Write permission for database/files by Kucukural, Alper
0
by Kucukural, Alper
History seems to load forever by cganote@iu.edu
3
by Carl Eberhard
nginx upload -> traceback by Langhorst, Brad
0
by Langhorst, Brad
job_wrapper.finish - No JSON object could be decoded: by Peter Cock
2
by Peter Cock
error in workflow by Milad Bastami
3
by Hans-Rudolf Hotz
slurm drmaaa by Jillian Rowe
1
by Brian Claywell
launching openmpi tool with Galaxy by Olivia Doppelt
0
by Olivia Doppelt
GATK2 (from IUC) Missing reference_genome selection by Geert Vandeweyer-4
1
by Björn Grüning-3
NGS toolbox does not appear by Nilaksha Neththikuma...
0
by Nilaksha Neththikuma...
Torque Exec Exception by ngsflow@hygenomics.c...
2
by ngsflow@hygenomics.c...
how to manage multiple tool versions by Rui Wang
2
by Rui Wang
tool trouble by Briand, Sheldon
10
by Greg Von Kuster
pbs runner deserializes server names as unicode by Eric Badger
4
by Eric Badger
Shared Data as options for tools by Shane Kirk
0
by Shane Kirk
LWR questions by Jun Fan
3
by John Chilton-4
tool_shed question on multiple tool versions by Rui Wang
0
by Rui Wang
new data manager can't build bowtie or sam fasta, interface differences, how to fetch ncbi stuff by Langhorst, Brad
1
by Raj Ayyampalayam
Galaxy database size and location by Ravi Alla
3
by Ravi Alla
Galaxy reports by philippe
4
by Martin Čech
Unable to build pbs_python via scramble by Peter Schmitt
12
by Peter Schmitt
Nightly testing status on the (Test) Tool Shed by Peter Cock
32
by Greg Von Kuster
Workflows with Conditionals and Loops by Michael E. Cotterell
8
by Aaron Petkau
Thread nucleotides onto a protein alignment (back-translation) by Peter Cock
1
by Peter Cock
Uploaded files not previewing at random by Sanka, Ravi
1
by Nate Coraor (nate@bx...
Cluster jobs running as real user by Shane Sturrock
2
by Shane Sturrock
Unable to share data by Sanka, Ravi
2
by Sanka, Ravi
System developer position available at the University of Oslo, Norway (Galaxy/HyperBrowser work) by Sveinung Gundersen
1
by Tracy K. Teal
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