Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9224)
Replies Last Post Views
UCSC Display problem by Peter Schmitt
8
by John Chilton-4
Persistent jobs in cluster queue even after canceling job in galaxy by Ravi Alla
9
by John Chilton-4
Verifying test output datatypes, was: Problem with <change_format> and conditional inputs? by Peter Cock
4
by John Chilton-4
BugFix for dynamic_options ParamValueFilter to run IUC SnpEff in a workflow by Jim Johnson-3
2
by Jim Johnson-3
Empty history pane by Liisa Koski-2
8
by Carl Eberhard
ToolSheds by César Acevedo
1
by Martin Čech
inserting .js file for visualization with d3.js by Chiron Lionel
2
by Chiron Lionel
http://toolshed.g2.bx.psu.edu/ is down? by Changyu Fan
2
by Greg Von Kuster
Reorder Sam files by Alexander Kurze
3
by Björn Grüning-3
InterMine data import tools missing? by Joel Richardson
0
by Joel Richardson
FTP password and web interface password by Yec'han Laizet
7
by Yec'han Laizet
upload error by Rui Wang
24
by hackdna
Puppet Modules by Eric Rasche
3
by John Chilton-4
Internal server error when importing workflows! by Hakeem Almabrazi
2
by John Chilton-4
How To properly use GALAXY_SLOTS by Geert Vandeweyer-4
5
by Geert Vandeweyer-4
How to install bowtie2 tool in galaxy by Ravi Alla
11
by Ravi Alla
Dataset's extra files by Charles Girardot
1
by John Chilton-4
Problem with <change_format> and conditional inputs? by Peter Cock
3
by John Chilton-4
Write permission for database/files by nephantes
1
by John Chilton-4
Quota History not getting purged by Alexander Kurze-2
3
by Peter Cock
Purging datasets as part of workflow? by Sveinung Gundersen
2
by John Chilton-4
Pick-you-own columns in BLAST+ tabular output by Peter Cock
3
by Peter Cock
tool_sheds_errors by Wang, Xiaofei
1
by Vipin TS
Local Galaxy web layout by shenwiyn
5
by Martin Čech
tool_dependency_dir (Installed, missing tool dependencies) by Wang, Xiaofei
3
by Wang, Xiaofei
installed bwa but there are no bwa files produced in galaxy-dist folder by Anna
0
by Anna
Re: Plugins by Michael E. Cotterell
4
by Carl Eberhard
Write permission for database/files by Kucukural, Alper
0
by Kucukural, Alper
History seems to load forever by cganote@iu.edu
3
by Carl Eberhard
nginx upload -> traceback by Langhorst, Brad
0
by Langhorst, Brad
job_wrapper.finish - No JSON object could be decoded: by Peter Cock
2
by Peter Cock
error in workflow by Milad Bastami
3
by Hans-Rudolf Hotz
slurm drmaaa by Jillian Rowe
1
by Brian Claywell
launching openmpi tool with Galaxy by Olivia Doppelt
0
by Olivia Doppelt
GATK2 (from IUC) Missing reference_genome selection by Geert Vandeweyer-4
1
by Björn Grüning-3
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