Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
LWR questions by Jun Fan
3
by John Chilton-4
tool_shed question on multiple tool versions by Rui Wang
0
by Rui Wang
new data manager can't build bowtie or sam fasta, interface differences, how to fetch ncbi stuff by Langhorst, Brad
1
by Raj Ayyampalayam
Galaxy database size and location by Ravi Alla
3
by Ravi Alla
Galaxy reports by philippe
4
by Martin Čech
Unable to build pbs_python via scramble by Peter Schmitt
12
by Peter Schmitt
Nightly testing status on the (Test) Tool Shed by Peter Cock
32
by Greg Von Kuster
Workflows with Conditionals and Loops by Michael E. Cotterell
8
by Aaron Petkau
Thread nucleotides onto a protein alignment (back-translation) by Peter Cock
1
by Peter Cock
Uploaded files not previewing at random by Sanka, Ravi
1
by Nate Coraor (nate@bx...
Cluster jobs running as real user by Shane Sturrock
2
by Shane Sturrock
Unable to share data by Sanka, Ravi
2
by Sanka, Ravi
System developer position available at the University of Oslo, Norway (Galaxy/HyperBrowser work) by Sveinung Gundersen
1
by Tracy K. Teal
BOSC 2014 Call for Abstracts by Dave Clements-2
0
by Dave Clements-2
Graph Datatypes by Björn Grüning-3
3
by Carl Eberhard
Exporting & Importing Tool Shed repository is just great! by Björn Grüning-3
6
by Peter Cock
Torque.py Bug by ngsflow@hygenomics.c...
2
by John Chilton-4
reference genome by Changyu Fan
0
by Changyu Fan
Display history.id in History Panel by juliech
1
by Carl Eberhard
Test ToolShed misfiling missing tool tests by Peter Cock
1
by Greg Von Kuster
March 2014 Galaxy Update Newsletter by Dave Clements-2
0
by Dave Clements-2
Galaxy command line API information by Benoit Meilhac
2
by Aaron Petkau
Markup safe egg problem/fetching the wrong eggs? by Joseph Ward
2
by Joseph Ward
Question on storage configuration for Galaxy datasets by Lukasse, Pieter
2
by John Chilton-4
universe_wsgi.ini question for Cistrome by Rui Wang
1
by Ido Tamir
Mercurial wants to overwrite my job_conf.xml by cganote@iu.edu
3
by Nate Coraor (nate@bx...
documentation by Shrum, Donald C
2
by Shrum, Donald C
Re: [galaxy-user] Galaxy + user program unable to locate files by Peter Cock
2
by Peter Cock
UCSC Display option by nephantes
2
by nephantes
bioblend run_tool function used with a tool containing repeats for inputs in its XML by Olivia Doppelt
0
by Olivia Doppelt
Difficulty dispatching toolshed tool jobs via job_conf.xml by Guest, Simon
8
by Björn Grüning-3
GATK2 is unable to find reference genomes by Fenglou Mao
3
by Björn Grüning-3
Apache problem by Kucukural, Alper
1
by nephantes
latest stable data management interface by Langhorst, Brad
2
by Langhorst, Brad
Apache problem by nephantes
0
by nephantes
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