Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
BOSC 2014 Call for Abstracts by Dave Clements-2
0
by Dave Clements-2
Graph Datatypes by Björn Grüning-3
3
by Carl Eberhard
Exporting & Importing Tool Shed repository is just great! by Björn Grüning-3
6
by Peter Cock
Torque.py Bug by ngsflow@hygenomics.c...
2
by John Chilton-4
reference genome by Changyu Fan
0
by Changyu Fan
Display history.id in History Panel by juliech
1
by Carl Eberhard
Test ToolShed misfiling missing tool tests by Peter Cock
1
by Greg Von Kuster
March 2014 Galaxy Update Newsletter by Dave Clements-2
0
by Dave Clements-2
Galaxy command line API information by Benoit Meilhac
2
by Aaron Petkau
Markup safe egg problem/fetching the wrong eggs? by Joseph Ward
2
by Joseph Ward
Question on storage configuration for Galaxy datasets by Lukasse, Pieter
2
by John Chilton-4
universe_wsgi.ini question for Cistrome by Rui Wang
1
by Ido Tamir
Mercurial wants to overwrite my job_conf.xml by cganote@iu.edu
3
by Nate Coraor (nate@bx...
documentation by Shrum, Donald C
2
by Shrum, Donald C
Re: [galaxy-user] Galaxy + user program unable to locate files by Peter Cock
2
by Peter Cock
UCSC Display option by nephantes
2
by nephantes
bioblend run_tool function used with a tool containing repeats for inputs in its XML by Olivia Doppelt
0
by Olivia Doppelt
Difficulty dispatching toolshed tool jobs via job_conf.xml by Guest, Simon
8
by Björn Grüning-3
GATK2 is unable to find reference genomes by Fenglou Mao
3
by Björn Grüning-3
Apache problem by Kucukural, Alper
1
by nephantes
latest stable data management interface by Langhorst, Brad
2
by Langhorst, Brad
Apache problem by nephantes
0
by nephantes
Blast+: new feature filter/mask... by taxid before job in one task by Thomas
4
by Peter Cock
using svg foreignObject tags can circumvent html sanitization by Tobias Sargeant
2
by John Chilton-4
Parallelism-enabled NCBI BLAST+ blastn does not appear to complete by Sanka, Ravi
4
by Sanka, Ravi
local toolshed with remote-user=true and require-user=falase by Langhorst, Brad
3
by Langhorst, Brad
Cufflinks doesn't stop by Federico Zambelli
8
by Björn Grüning-3
You do not have permission to add datasets to 1 requested histories. by Shrum, Donald C
1
by John Chilton-4
contributing patches to toolshed repos... by Langhorst, Brad
5
by Greg Von Kuster
MAF Import Error by Doan, Ryan
0
by Doan, Ryan
Error when installing package_galaxy_utils by Sarah Diehl-2
4
by Sarah Diehl-2
Optional multiple file selectors, by Peter Cock
5
by Peter Cock
Rendering of multi-selection list by Michael Römer
2
by Michael Römer
Test Tool Shed, nightly tests: Error 'unicode' object has no attribute 'get' by Peter Cock
6
by Björn Grüning-3
Unicode error manipulation of fastq by Cantarel, Brandi L.
1
by Jennifer Jackson
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