Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Unexpected behaviour when downloading HTML files by Shian Su
1
by Jennifer Jackson
Reference Genome in snpEff Tool by Clint Christensen
3
by Jennifer Jackson
Where to add Account activation by Danielle Furtado
3
by Martin Čech
With regard to Galaxy tools, a repository should only contain one by Peter Cock
1
by Greg Von Kuster
ImportError: No module named json by Fenglou Mao
6
by Fenglou Mao
Database and FTP setup by Conrad, Turner Allen
4
by Nate Coraor (nate@bx...
package_r_xx problem: X11 is not available by Geert Vandeweyer-4
7
by Greg Von Kuster
Error in SICER tool by Nikos Sidiropoulos
1
by Jennifer Jackson
Fix for need_late_validation error when running workflow with XY_Plot_1 tool by Jim Johnson-3
0
by Jim Johnson-3
Running out of memory on data download by Michael Römer
3
by Michael Römer
select with a value preselected by Ketan Maheshwari
2
by Ketan Maheshwari
Tools with multiple input files, and multiple output files by Peter Cock
7
by Jim Johnson-3
Galaxy-LIMS and multiple sample by Davide Cittaro-2
1
by Martin Čech
Galaxy-LIMS and multiple sample by Cittaro Davide
0
by Cittaro Davide
Sending tool output to input parameters of downstream tool(s) by Peter Cock
0
by Peter Cock
anybody know how to use #{input} in a workflow with the XY plotting tool? by Langhorst, Brad
1
by Dannon Baker-2
Role-based tool availability. by Luca Toldo
1
by Björn Grüning-3
Acceleration Card Optimization by panza1370
1
by Nate Coraor (nate@bx...
Renaming in workflow - bis by Charles Girardot
0
by Charles Girardot
Galaxy Tool Shed packages for Biopython by Peter Cock
3
by Björn Grüning-3
Setting access role for datasets through the API by Joseph Ward
1
by John Chilton-3
Attempting to bind to AMQP message queue, but kombu dependency unavailable by Peter Cock
3
by Peter Cock
SnpEff_and_CloudMap_for_other_speices_other_than_worm (galaxy not local) by Wang, Xiaofei
4
by Jennifer Jackson
space in text tool results in two arguments by Ketan Maheshwari
3
by Ross-2
New install and handlers for tools by Thomas Green
1
by Peter Cock
Parsing input format in galaxy tools by Nikos Sidiropoulos
2
by Nikos Sidiropoulos
Error in Galaxy Reports by Nikos Sidiropoulos
4
by Nikos Sidiropoulos
WARNING:galaxy.datatypes.registry:Overriding conflicting datatype by Jim Johnson-3
4
by Greg Von Kuster
Twill compares wrong file; was: Twill comparisons ignore GALAXY_TEST_NO_CLEANUP by Peter Cock
10
by Greg Von Kuster
shed tool dependencies by Geert Vandeweyer
3
by Björn Grüning-3
external user authentication by Shrum, Donald C
0
by Shrum, Donald C
nginx upload by Briand, Sheldon
0
by Briand, Sheldon
popup window possible? by burdettn
0
by burdettn
setting up Galaxy for torque pbs by Ketan Maheshwari
0
by Ketan Maheshwari
History panel filters by Federico Zambelli-2
1
by Carl Eberhard
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