Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
bowtie2 toolshed installation by Alexander Kurze
5
by Dave Bouvier
filter tag in output, multiple criteria by Geert Vandeweyer-4
4
by Björn Grüning-3
bias correction in cufflinks by Malik, Shivani
0
by Malik, Shivani
Galaxy local toolshed - issue hg pushing by Eric Rasche
0
by Eric Rasche
GATK2 by Briand, Sheldon
6
by Briand, Sheldon
Toolbox filtering question by Lukasse, Pieter
2
by Björn Grüning-3
object_store_conf.xml route users to different storage by Eric Kuyt
0
by Eric Kuyt
questions about mapping tools 'bowtie2' by wang haifang
0
by wang haifang
RNA-seq by Karla Fernández Cano
0
by Karla Fernández Cano
Error when searching for tools in local instance. by Perez, Ricardo
4
by Perez, Ricardo
sysadmin help by Shrum, Donald C
1
by Nate Coraor (nate@bx...
Problem with editing permissions on Galaxy libraries by Christophe Antoniews...
0
by Christophe Antoniews...
datatype for executables by Ketan Maheshwari
4
by Ketan Maheshwari
404 by Shrum, Donald C
0
by Shrum, Donald C
ProFFTPd-1.3.4d no longer able to authenticate users from Postgresql database by hazards
4
by Dooley, Damion
HTML form of select parameter by Johannes Eichner
2
by Jeremy Goecks-3
Install tools from Toolshed by Jennifer Jackson
0
by Jennifer Jackson
The main Galaxy Tool Shed is now running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Galaxy problem with DRMAA by Jingchao
0
by Jingchao
Fwd: Galaxy tool is not running by Eric Kuyt
1
by Daniel Blankenberg
galaxy tries to access toolshed at http instead of using https by Jager, Victor de
0
by Jager, Victor de
Help with two questions about transfering data to galaxy local instance by huayan
1
by John Chilton
Toolshed throwing error when reading tool's XML by Dooley, Damion
4
by Dooley, Damion
error importing function definition for `module' by Cantarel, Brandi L.
0
by Cantarel, Brandi L.
Fetch Taxonomic Representation tool problem by Carolyn Rogers
0
by Carolyn Rogers
Unified Genotyper index file error by Heidi Pagán
1
by Björn Grüning-3
XML wrapper : use cheetath variable in from_work_dir tag by Laure QUINTRIC
1
by Thon deBoer
Import workflows via API by burdettn
5
by Nicola Soranzo
Re: small suggestion: customize stuff by fernandez Edgar
1
by John Chilton
XML wrapper : use cheetath variable in from_work_dir tag by Laure QUINTRIC
1
by John Chilton
setting up the drmaa for sge by Cantarel, Brandi L.
4
by Cantarel, Brandi L.
http_proxy environment kills run_functional_tests.sh by Luca Toldo
0
by Luca Toldo
dbkey in cuffdiff by Margarita Schlackow
0
by Margarita Schlackow
Can't view file_name in histories via API unless admin? by burdettn
6
by Dannon Baker-2
ToolShed slow? esp uploading by Peter Cock
1
by Peter Cock
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