Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
IGV display_application configuration failed with require_login=TRUE by navratil
3
by navratil
Several jobs stalled in the queue: Job runner assigned but no external ID recorded by Derrick LIN
1
by Derrick LIN
igv integration by Langhorst, Brad
0
by Langhorst, Brad
Cluster nodes without NFS access to galaxy-dev. by Luca Toldo
1
by John Chilton
Running tools from within a tool by Ketan Maheshwari
0
by Ketan Maheshwari
Upload via FTP - Assertion Error on Change ownership of working dictory by Adam Brenner
3
by Adam Brenner
tools fails only in workflow by Christian Hundsrucke...
0
by Christian Hundsrucke...
Cheetah code issue by Ketan Maheshwari
2
by Ketan Maheshwari
How to install tool-shed behind proxy with authentication ? by Luca Toldo
3
by Luca Toldo
Indexes separator in tool by Bossers, Alex
0
by Bossers, Alex
local galaxy instance can't recognize file format!! by JU HUCK LEE
0
by JU HUCK LEE
Remote User Logout by nephantes
7
by Dave Clements-2
February 2014 Galaxy Update Newsletter by Dave Clements-2
0
by Dave Clements-2
bowtie2 toolshed installation by Alexander Kurze
5
by Dave Bouvier
filter tag in output, multiple criteria by Geert Vandeweyer-4
4
by Björn Grüning-3
bias correction in cufflinks by Malik, Shivani
0
by Malik, Shivani
Galaxy local toolshed - issue hg pushing by Eric Rasche
0
by Eric Rasche
GATK2 by Briand, Sheldon
6
by Briand, Sheldon
Toolbox filtering question by Lukasse, Pieter
2
by Björn Grüning-3
object_store_conf.xml route users to different storage by Eric Kuyt
0
by Eric Kuyt
questions about mapping tools 'bowtie2' by wang haifang
0
by wang haifang
RNA-seq by Karla Fernández Cano
0
by Karla Fernández Cano
Error when searching for tools in local instance. by Perez, Ricardo
4
by Perez, Ricardo
sysadmin help by Shrum, Donald C
1
by Nate Coraor (nate@bx...
Problem with editing permissions on Galaxy libraries by Christophe Antoniews...
0
by Christophe Antoniews...
datatype for executables by Ketan Maheshwari
4
by Ketan Maheshwari
404 by Shrum, Donald C
0
by Shrum, Donald C
ProFFTPd-1.3.4d no longer able to authenticate users from Postgresql database by hazards
4
by Dooley, Damion
HTML form of select parameter by Johannes Eichner
2
by Jeremy Goecks-3
Install tools from Toolshed by Jennifer Jackson
0
by Jennifer Jackson
The main Galaxy Tool Shed is now running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Galaxy problem with DRMAA by Jingchao
0
by Jingchao
Fwd: Galaxy tool is not running by Eric Kuyt
1
by Daniel Blankenberg
galaxy tries to access toolshed at http instead of using https by Jager, Victor de
0
by Jager, Victor de
Help with two questions about transfering data to galaxy local instance by huayan
1
by John Chilton
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