Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9224)
Replies Last Post Views
Install tools from Toolshed by Jennifer Jackson
0
by Jennifer Jackson
The main Galaxy Tool Shed is now running the next-stable branch by Greg Von Kuster
0
by Greg Von Kuster
Galaxy problem with DRMAA by Jingchao
0
by Jingchao
Fwd: Galaxy tool is not running by Eric Kuyt
1
by Daniel Blankenberg
galaxy tries to access toolshed at http instead of using https by Jager, Victor de
0
by Jager, Victor de
Help with two questions about transfering data to galaxy local instance by huayan
1
by John Chilton
Toolshed throwing error when reading tool's XML by Dooley, Damion
4
by Dooley, Damion
error importing function definition for `module' by Cantarel, Brandi L.
0
by Cantarel, Brandi L.
Fetch Taxonomic Representation tool problem by Carolyn Rogers
0
by Carolyn Rogers
Unified Genotyper index file error by Heidi Pagán
1
by Björn Grüning-3
XML wrapper : use cheetath variable in from_work_dir tag by Laure QUINTRIC
1
by Thon deBoer
Import workflows via API by burdettn
5
by Nicola Soranzo
Re: small suggestion: customize stuff by fernandez Edgar
1
by John Chilton
XML wrapper : use cheetath variable in from_work_dir tag by Laure QUINTRIC
1
by John Chilton
setting up the drmaa for sge by Cantarel, Brandi L.
4
by Cantarel, Brandi L.
http_proxy environment kills run_functional_tests.sh by Luca Toldo
0
by Luca Toldo
dbkey in cuffdiff by Margarita Schlackow
0
by Margarita Schlackow
Can't view file_name in histories via API unless admin? by burdettn
6
by Dannon Baker-2
ToolShed slow? esp uploading by Peter Cock
1
by Peter Cock
numpy and scipy by David Hoover
1
by Björn Grüning-3
casOT wrapper by SHAUN WEBB
0
by SHAUN WEBB
toolshed image file location problem by Eric Kuyt-2
2
by Eric Kuyt-2
functional test errors when running behind proxy with authentication by Luca Toldo
1
by saketkc
Re: [galaxy-user] error:ordinary output of macs in stderr by Björn Grüning-3
0
by Björn Grüning-3
Installation problems due to limited support for proxy with authentication. by Luca Toldo
0
by Luca Toldo
GATK2 Galaxy wrapper available, testing and help needed by Björn Grüning-3
0
by Björn Grüning-3
DRMAA bug in galaxy-central by Björn Grüning-3
2
by Björn Grüning-3
Galaxy Reports link - registed users per month - does not work by Liisa Koski-2
3
by Martin Čech
Galaxy Australasia Workshop (GAW 2014), 24-25 March, Melbourne by Dave Clements-2
0
by Dave Clements-2
A new tool_data_table_conf.xml created under tool-data directory by Derrick LIN
7
by Nicola Soranzo
moving galaxy instance to different location by Ido Tamir
2
by John Chilton
Help by Pasquale Notarangelo
0
by Pasquale Notarangelo
Pick-you-own columns in BLAST+ tabular output by Peter Cock
2
by Peter Cock
html network by Lionel Chiron
0
by Lionel Chiron
Re: making tools with Galaxy by Greg Von Kuster
1
by Björn Grüning-3
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