Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9183)
Replies Last Post Views
ODoSE - error when using exclusively 'external' genomes by Jen
0
by Jen
galaxy prod installation with apache proxy by fernandez Edgar
1
by John Chilton
Installing Repositories from Galaxy Tool Shed To Galaxy by Crystal Goh Wei Pin
0
by Crystal Goh Wei Pin
Is there a way yet to more easily determine name of inputs for renaming in workflows by Thon deBoer
0
by Thon deBoer
Including descriptions etc in extended BLAST+ tabular output by Peter Cock
13
by Peter Cock
Request: Option to reduce server data transfer for big workflow in cluster by gumboy
8
by Nate Coraor (nate@bx...
Tool Access Control by Eric Rasche
6
by Nicola Soranzo
Error with Sam tools in Galaxy 4 by UMD Bioinformatics
3
by UMD Bioinformatics
New Galaxy won't start, SQLite (OperationalError) database is locked by Peter Cock
5
by Lukasse, Pieter
Sysadmin Question by Shrum, Donald C
1
by Nate Coraor (nate@bx...
Consultez mon profil LinkedIn by Rémy Dernat
0
by Rémy Dernat
Error with tool migration by Kerry Deutsch
3
by Dave Bouvier
GCC2014 Training Day: Topic Nomination is now open by Dave Clements-2
1
by Dave Clements-2
Error running CCAT test by Jennifer Jackson
0
by Jennifer Jackson
Re: problems with exporting or importing data from file by Lukasse, Pieter
1
by Jeremy Goecks
sort list of ftp uploaded files by Ulf
5
by Ulf
How to use Galaxy API? by xlwang
2
by Martin Čech
Bug: Toolbox filters not applied in workflows by Eric Rasche
5
by John Chilton
"Skip automated testing of tools in this revision" setting? by Peter Cock
8
by Nicola Soranzo
Trinity in local by Jorge Braun
1
by Jennifer Jackson
Count intervals in one file overlapping intervals in another file by Javier Simon-Sanchez
4
by Javier Simon-Sanchez
cloudlaunch - Can't ssh or ping by greg-2
4
by greg-2
cloud launch question by greg-2
1
by Daniel Blankenberg
'Lost connection to MySQL server during query' error by David Hoover
0
by David Hoover
galaxy local installation by fernandez Edgar
5
by fernandez Edgar
survey by philippe
0
by philippe
toolshed error on cloudman by khmiga
1
by Björn Grüning-3
cloudman console error by khmiga
0
by khmiga
a galaxy of issues; Job output not returned from cluster,drmaa getting wrong LSF job id and job.o files not being found and moving files occurring before upload completes. by hazards
1
by Nate Coraor (nate@bx...
problems converting large bcf files to vcf by Thomas
0
by Thomas
Again: Variable inputs in a workflow by Preussner, Jens
2
by John Chilton
Galaxy wrappers for CLC Assembly Cell (CLCbio) by Peter Cock
7
by Peter Cock
funny bug with latest galaxy release when using IE by ambrose andongabo
1
by Hans-Rudolf Hotz
inconsistent BAM-to-SAM behavior by Jennifer Jackson
2
by Jennifer Jackson
How to get an API key during execution? by burdettn
1
by Dannon Baker-2
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