Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
NCBI Blast+ "BLAST XML to tabular" tool question - ADDENDUM by Dooley, Damion
0
by Dooley, Damion
Samtools and idxstats by Michiel Van Bel
4
by Peter Cock
unable to share dataset history by Manisha Sapre
5
by Dannon Baker-2
secure Galaxy with SSL by Jingchao
4
by Jingchao
wigTobigwig error: broken pipe and len file not found by Rui Wang
2
by Rui Wang
Next GalaxyAdmins Meetup: November 20 by Dave Clements-2
1
by Dave Clements-2
Empty tool panel by Yec'han Laizet
2
by Yec'han Laizet
ACTION needed: fix error in Cloud Cluster Galaxy Trackster DATE needed: needed for workshop on Wednesday 20 November by Young, Lynn (NIH/OD/...
3
by Dannon Baker-2
BAM/BAI index file test problem on (Test) Tool Shed by Peter Cock
12
by Peter Cock
Tool unit tests using composite datatypes by Peter Cock
26
by Peter Cock
tardis job splitter by McCulloch, Alan
5
by John Chilton
auto removal of datasets when number of outputs cannot be determined until tool is run by Nikhil Joshi-2
1
by John Chilton
Tool Shed packages for BLAST+ binaries by Peter Cock
54
by Peter Cock
wiki contributions: Admin/Config/ProFTPd_with_AD by Eric Rasche
1
by Dave Clements-2
reasonable linux box specs by Andrew Norman
2
by Jeremy Goecks
how to add openstack in biocloudcentral ? by Jennifer Jackson
0
by Jennifer Jackson
Setting a queue for torque submission by Jennifer Jackson
1
by Nate Coraor (nate@bx...
Galaxy environment on local resources by Alistair Chilcott
2
by John Chilton
Failed to generate job destination by Björn Grüning
3
by John Chilton
LDAP user auth by Jon Ambler
1
by Eric Rasche
Converting .gff3 to 12-column .bed by suzubell
5
by Lindsay Rutter
Errors running DRMAA and PBS on remote server running Torque 4 by cganote@iu.edu
3
by Moskalenko,Oleksandr
Managing Data Locality by Paniagua, Eric
4
by John Chilton
api script import_library_dataset_to_history.py problem by Olivia Doppelt
0
by Olivia Doppelt
Dynamic_options selected value as input for second dynamic_options function call by Hans van Leeuwen
1
by Hans van Leeuwen
Error editing users associated with a quota by Peter Cock
4
by Peter Cock
SLURM and hidden success by Andrew Warren
2
by Andrew Warren
DRMAA/SGE job handling regression? by Peter Cock
0
by Peter Cock
Using input dataset names in output dataset names by Peter Cock
8
by John Chilton
set_environment_for_install problem, seeking for ideas by Björn Grüning-3
13
by John Chilton
multiple output tool in workflow by Jennifer Jackson
3
by John Chilton
Trouble getting proftpd to use Galaxy postgresql authentication by hazards
0
by hazards
Trying to map fastq reads with bowtie for illumina to the reference genome sacCer3 by Frank Tedeschi
0
by Frank Tedeschi
tool of installing tool shed repositories by ngsflow@hygenomics.c...
3
by Greg Von Kuster
Contributing to genome indexes on rsync server by Brad Chapman
8
by Björn Grüning
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