Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9170)
Replies Last Post Views
Bowtie2 mm9 index by Davis, Mary
2
by Jennifer Jackson
Re: Empty bowtie2 output by IIHG Galaxy Administ...
1
by Jennifer Jackson
Fw: "No peek" issue and datasets wrongly reported as "Empty" by Jean-Francois Payott...
2
by Jean-Francois Payott...
datacache & bowtie2 for mm9 ? by Curtis Hendrickeduso...
3
by Jennifer Jackson
Comments on and a fix for John Chilton's tool-dependency-resolver-plugins by Guest, Simon
7
by Guest, Simon
Installing Galaxy behind an Apache proxy using mod_auth_cas for user auth by Sandra Gesing
1
by Sandra Gesing
Dynamic tool configuration by Biobix Galaxy
1
by John Chilton
Bug: Two copies of wiggle_to_simple.xml by Peter Cock
1
by John Chilton
Security vulnerability in Galaxy filtering tools by Nate Coraor (nate@bx...
5
by Martin Čech
local_task_queue_workers by Jorrit Boekel
1
by John Chilton
Trouble setting up a local instance of Galaxy by hazards
1
by Hans-Rudolf Hotz
Question regarding walltime exceeded not being correctly reported via the WebUI by Dan Sullivan
6
by John Chilton
Dynamic tool configuration by Biobix Galaxy
0
by Biobix Galaxy
Galaxy dropping jobs? by vazovn
3
by vazovn
Supporting file sets for running a tool with multiple input files by Lukasse, Pieter
2
by Lukasse, Pieter
Re: latest galaxy-central version by James Taylor
8
by Martin Čech
errors after updating galaxy distribution by Dan Tenenbaum
0
by Dan Tenenbaum
Egg distribution issue by Iry Witham
0
by Iry Witham
Deleting history entries not working, javascript void link? by Peter Cock
1
by Carl Eberhard
galaxy cant find binaries in by tomjan
1
by John Chilton
Retrieve list of published workflows from API by takadonet
1
by John Chilton
Nov 04, 2013 Galaxy Distribution by Jennifer Jackson
0
by Jennifer Jackson
Re: [galaxy-user] Inquiring by Nate Coraor (nate@bx...
51
by Nate Coraor (nate@bx...
Fw: Re: tool of installing tool shed repositories by ngsflow@hygenomics.c...
0
by ngsflow@hygenomics.c...
tool of installing tool shed repositories by ngsflow@hygenomics.c...
0
by ngsflow@hygenomics.c...
Installing toolshed repositories with set_environment dependency by S.D. Hiltemann
17
by Peter Cock
What to do with toolshed tools that get stuck "Installing" by iracooke
12
by Björn Grüning
Tool XML form building bug with <options from_data_table="..."> ? by Jennifer Jackson
2
by damion@learningpoint...
Workflows with multiple editors by Eric Rasche
3
by John Chilton
browse directories on galaxy server by David Hoover
2
by Hans-Rudolf Hotz
User activations by jordi-2
1
by Martin Čech
November 2013 Galaxy Update Newsletter by Dave Clements-2
0
by Dave Clements-2
Running functional tests is too slow by Peter Cock
5
by Peter Cock
Filtering number of outputs with a conditional by Alexandre Loywick
3
by Peter Cock
Blastdb and blastdbp datatypes not enforced by cganote@iu.edu
2
by cganote@iu.edu
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