Galaxy Development List Archive

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Galaxy Project

Archive for the Galaxy-Dev mailing list. If you have a question about deploying, enhancing, tuning or adding to a Galaxy instance then this is a good place to find an answer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


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Topics (9232)
Replies Last Post Views
job_conf.xml output_size limit by Sarah Diehl-2
0
by Sarah Diehl-2
December 2013 Galaxy Update by Dave Clements-2
0
by Dave Clements-2
Error running Clustalw and HyPhy on Cloudman by khmiga
10
by Ross-2
Active Directory by Alexander Kurze-2
1
by Stewart, Andrew
Patch for lib/galaxy/webapps/galaxy/api/provenance.py for optional dataset parameters by Jim Johnson-3
1
by John Chilton
Tool never get properly installed into Galaxy by Stephanie LE GRAS
2
by Stephanie LE GRAS
Missing test results on (Test) Tool Shed by Peter Cock
77
by Peter Cock
character set encoding metadata by Robert Baertsch
1
by John Chilton
Re: galaxy-dev Digest, Vol 89, Issue 32 by Dooley, Damion
0
by Dooley, Damion
Active Directory by Alexander Kurze
0
by Alexander Kurze
Active Directory by Alexander Kurze-2
0
by Alexander Kurze-2
Uploading files from password protected URL's by Nicolas Cybulski
0
by Nicolas Cybulski
Add a tool to galaxy by sun liang
0
by sun liang
Dynamic tool loading by Mikel Egaña Arangure...
2
by Mikel Egaña Arangure...
Library permission page broken by David Hoover
3
by Aysam Guerler
Uploading files from password protected URL's by Nicolas Cybulski
1
by John Chilton
Error while trying to extract DNA by Alan WiIliams
1
by Jennifer Jackson
Compressed data files in Galaxy? (e.g. GZIP or BGZF) by Peter Cock
4
by McCulloch, Alan
Why does check_html only read first 100 lines? by Robert Davidson
1
by John Chilton
rename variable #{input} as a workflow parameter by Thomas
0
by Thomas
NCBI Blast+ "BLAST XML to tabular" tool question by Dooley, Damion
4
by Peter Cock
FTP bug with automatically decompressed files by David Hoover
0
by David Hoover
Tab2Fasta Script by Hagan, Richard (haga...
1
by John Chilton
Postgres database migration issue with fresh install by Jager, Victor de
1
by Dannon Baker-2
Write all intermediate workflow data to /tmp/ only by gumboy
4
by Peter Cock
Status of GATK in Galaxy by Björn Grüning-3
8
by Jim Johnson-3
Lock Galaxy job submission by Peter Cock
2
by Peter Cock
NCBI Blast+ "BLAST XML to tabular" tool question - ADDENDUM by Dooley, Damion
0
by Dooley, Damion
Samtools and idxstats by Michiel Van Bel
4
by Peter Cock
unable to share dataset history by Manisha Sapre
5
by Dannon Baker-2
secure Galaxy with SSL by Jingchao
4
by Jingchao
wigTobigwig error: broken pipe and len file not found by Rui Wang
2
by Rui Wang
Next GalaxyAdmins Meetup: November 20 by Dave Clements-2
1
by Dave Clements-2
Empty tool panel by Yec'han Laizet
2
by Yec'han Laizet
ACTION needed: fix error in Cloud Cluster Galaxy Trackster DATE needed: needed for workshop on Wednesday 20 November by Young, Lynn (NIH/OD/...
3
by Dannon Baker-2
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